Results 61 - 80 of 385 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 52859 | 0.66 | 0.589021 |
Target: 5'- gCGGCUGCuGCGuGGCCuCGCGguACCggUCGAa -3' miRNA: 3'- -GCCGGCGcCGC-UCGG-GUGC--UGG--AGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 39155 | 0.66 | 0.589021 |
Target: 5'- cCGcGCCGCGGCG-GCCUcuCGGCgcugCUCGc -3' miRNA: 3'- -GC-CGGCGCCGCuCGGGu-GCUG----GAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 49033 | 0.66 | 0.589021 |
Target: 5'- gGGCCG-GGCcaGGCCCACGGgCUgGc -3' miRNA: 3'- gCCGGCgCCGc-UCGGGUGCUgGAgCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 21507 | 0.66 | 0.589021 |
Target: 5'- gCGGgcgucaCCGgGGCGGGCUCG-GGCUUCGGc -3' miRNA: 3'- -GCC------GGCgCCGCUCGGGUgCUGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 5246 | 0.66 | 0.589021 |
Target: 5'- gCGGCgGCGGCGggGGCCCgggggGCGGagggCGAg -3' miRNA: 3'- -GCCGgCGCCGC--UCGGG-----UGCUgga-GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 24634 | 0.66 | 0.58806 |
Target: 5'- aGGUa--GGCGAGCCCGCGgagcacgGCC-CGGa -3' miRNA: 3'- gCCGgcgCCGCUCGGGUGC-------UGGaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 63481 | 0.66 | 0.58806 |
Target: 5'- gGGCgGCGGCGGcGCCCGaagaaggUGGCCa--- -3' miRNA: 3'- gCCGgCGCCGCU-CGGGU-------GCUGGagcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 89616 | 0.66 | 0.579427 |
Target: 5'- uGGCCGCGaggaugaggaGCGuGUgCGCGcCCUUGAc -3' miRNA: 3'- gCCGGCGC----------CGCuCGgGUGCuGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 68661 | 0.66 | 0.579427 |
Target: 5'- aCGGCCgGCGG--GGCCCGCGucacccuuauaACCUCc- -3' miRNA: 3'- -GCCGG-CGCCgcUCGGGUGC-----------UGGAGcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 20220 | 0.66 | 0.579427 |
Target: 5'- gGGCCGCgcaGGCGAccccGCCCAagaaGAUCagGAg -3' miRNA: 3'- gCCGGCG---CCGCU----CGGGUg---CUGGagCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 59614 | 0.66 | 0.589021 |
Target: 5'- aCGGCCccggaGGCGuaguGCCCguacACGGCCcCGAa -3' miRNA: 3'- -GCCGGcg---CCGCu---CGGG----UGCUGGaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 64240 | 0.66 | 0.589021 |
Target: 5'- gGGCCGCGacggcggcGCGGGCC-ACGcUCUCGu -3' miRNA: 3'- gCCGGCGC--------CGCUCGGgUGCuGGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 38780 | 0.66 | 0.589021 |
Target: 5'- cCGGCUcCGGCGcccgcucgGGCCCAUG-CC-CGAg -3' miRNA: 3'- -GCCGGcGCCGC--------UCGGGUGCuGGaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 7758 | 0.66 | 0.589021 |
Target: 5'- -cGCCGgGGCGGGagaaCCGgaccCGAaCCUCGAg -3' miRNA: 3'- gcCGGCgCCGCUCg---GGU----GCU-GGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 133459 | 0.66 | 0.589021 |
Target: 5'- uGGCCcCGGuCGAgGCCCgcgagGCGGCCgCGGg -3' miRNA: 3'- gCCGGcGCC-GCU-CGGG-----UGCUGGaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 125237 | 0.66 | 0.589021 |
Target: 5'- nGGCC-CGGCGcuCCCcCGGCC-CGGc -3' miRNA: 3'- gCCGGcGCCGCucGGGuGCUGGaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 121051 | 0.66 | 0.589021 |
Target: 5'- uGGCCugcccGCGcGUGGGCuUCACGugCUCGc -3' miRNA: 3'- gCCGG-----CGC-CGCUCG-GGUGCugGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 104081 | 0.66 | 0.589021 |
Target: 5'- uGcGCCGCGcCGAGCagCACGcCUUCGAc -3' miRNA: 3'- gC-CGGCGCcGCUCGg-GUGCuGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 103056 | 0.66 | 0.589021 |
Target: 5'- uGGCCGaGGCGcaGGCgCACGggcACCUgGAg -3' miRNA: 3'- gCCGGCgCCGC--UCGgGUGC---UGGAgCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 98117 | 0.66 | 0.589021 |
Target: 5'- aGGCgCGCGcGCgccGAGCCCACGguuaguguGCC-CGGc -3' miRNA: 3'- gCCG-GCGC-CG---CUCGGGUGC--------UGGaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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