miRNA display CGI


Results 101 - 120 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 125208 0.66 0.569867
Target:  5'- gGGCCccGCGGCc--CCCGCGGCCgcccgUCGGg -3'
miRNA:   3'- gCCGG--CGCCGcucGGGUGCUGG-----AGCU- -5'
29505 3' -63.7 NC_006151.1 + 86260 0.66 0.569867
Target:  5'- uGGCCGUGGuCGAcGacgaCCGCGGCCccuucuuccUCGGc -3'
miRNA:   3'- gCCGGCGCC-GCU-Cg---GGUGCUGG---------AGCU- -5'
29505 3' -63.7 NC_006151.1 + 68073 0.66 0.569867
Target:  5'- gGGCagGuCGGCGGGCa-GCG-CCUCGAg -3'
miRNA:   3'- gCCGg-C-GCCGCUCGggUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 58749 0.66 0.569867
Target:  5'- aGcGCCGCGGCca--CCGCGGCCgcCGAg -3'
miRNA:   3'- gC-CGGCGCCGcucgGGUGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 98458 0.66 0.568913
Target:  5'- cCGGCCuggcgcuGUGGCGccuGCgCCACGACUgggaCGAg -3'
miRNA:   3'- -GCCGG-------CGCCGCu--CG-GGUGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 14064 0.66 0.579427
Target:  5'- gGGUgCGUGGCGgcccGGCCgACGGCaCUCGc -3'
miRNA:   3'- gCCG-GCGCCGC----UCGGgUGCUG-GAGCu -5'
29505 3' -63.7 NC_006151.1 + 29140 0.66 0.579427
Target:  5'- -aGUCGCGG-GAGCgcgcgugacccgCCGCGACCUCu- -3'
miRNA:   3'- gcCGGCGCCgCUCG------------GGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 49033 0.66 0.589021
Target:  5'- gGGCCG-GGCcaGGCCCACGGgCUgGc -3'
miRNA:   3'- gCCGGCgCCGc-UCGGGUGCUgGAgCu -5'
29505 3' -63.7 NC_006151.1 + 21507 0.66 0.589021
Target:  5'- gCGGgcgucaCCGgGGCGGGCUCG-GGCUUCGGc -3'
miRNA:   3'- -GCC------GGCgCCGCUCGGGUgCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 5246 0.66 0.589021
Target:  5'- gCGGCgGCGGCGggGGCCCgggggGCGGagggCGAg -3'
miRNA:   3'- -GCCGgCGCCGC--UCGGG-----UGCUgga-GCU- -5'
29505 3' -63.7 NC_006151.1 + 24634 0.66 0.58806
Target:  5'- aGGUa--GGCGAGCCCGCGgagcacgGCC-CGGa -3'
miRNA:   3'- gCCGgcgCCGCUCGGGUGC-------UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 63481 0.66 0.58806
Target:  5'- gGGCgGCGGCGGcGCCCGaagaaggUGGCCa--- -3'
miRNA:   3'- gCCGgCGCCGCU-CGGGU-------GCUGGagcu -5'
29505 3' -63.7 NC_006151.1 + 89616 0.66 0.579427
Target:  5'- uGGCCGCGaggaugaggaGCGuGUgCGCGcCCUUGAc -3'
miRNA:   3'- gCCGGCGC----------CGCuCGgGUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 68661 0.66 0.579427
Target:  5'- aCGGCCgGCGG--GGCCCGCGucacccuuauaACCUCc- -3'
miRNA:   3'- -GCCGG-CGCCgcUCGGGUGC-----------UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 20220 0.66 0.579427
Target:  5'- gGGCCGCgcaGGCGAccccGCCCAagaaGAUCagGAg -3'
miRNA:   3'- gCCGGCG---CCGCU----CGGGUg---CUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 141394 0.66 0.579427
Target:  5'- gGGCaaacaGCGGCGuGUCCGgCGAUCggugCGGg -3'
miRNA:   3'- gCCGg----CGCCGCuCGGGU-GCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 124674 0.66 0.579427
Target:  5'- aCGGCCugcGCGaGgGGGCCCACGgggaGCacaUCGGc -3'
miRNA:   3'- -GCCGG---CGC-CgCUCGGGUGC----UGg--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 101534 0.66 0.579427
Target:  5'- aGGCCuucGUGGCGcGCCUGCGcCCggCGGa -3'
miRNA:   3'- gCCGG---CGCCGCuCGGGUGCuGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 99362 0.66 0.579427
Target:  5'- gCGGUCGuCGGCGGcgucguGCaCCGCcuCCUCGAc -3'
miRNA:   3'- -GCCGGC-GCCGCU------CG-GGUGcuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 60747 0.66 0.579427
Target:  5'- aGGCaGCGGCG-GCUCGCGAaggCGGu -3'
miRNA:   3'- gCCGgCGCCGCuCGGGUGCUggaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.