miRNA display CGI


Results 121 - 140 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 59933 0.66 0.560346
Target:  5'- gCGcGCCgucaGCGGCG-GCUCGCaGcCCUCGAg -3'
miRNA:   3'- -GC-CGG----CGCCGCuCGGGUG-CuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 59290 0.66 0.560346
Target:  5'- aCGaG-CGCGGCGuggcGCCCGCGGCUcagCGGg -3'
miRNA:   3'- -GC-CgGCGCCGCu---CGGGUGCUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 9041 0.66 0.569867
Target:  5'- -cGCCGgGGCGc-CCCGCGugCUCc- -3'
miRNA:   3'- gcCGGCgCCGCucGGGUGCugGAGcu -5'
29505 3' -63.7 NC_006151.1 + 52462 0.66 0.569867
Target:  5'- aCGGCgGCcaGGCGccgguaGGCCgCcgugACGGCCUCGGg -3'
miRNA:   3'- -GCCGgCG--CCGC------UCGG-G----UGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 130625 0.66 0.569867
Target:  5'- uGGUCGCGGCucacGAGCgCCGCcgaGGCCgccugCGGc -3'
miRNA:   3'- gCCGGCGCCG----CUCG-GGUG---CUGGa----GCU- -5'
29505 3' -63.7 NC_006151.1 + 89616 0.66 0.579427
Target:  5'- uGGCCGCGaggaugaggaGCGuGUgCGCGcCCUUGAc -3'
miRNA:   3'- gCCGGCGC----------CGCuCGgGUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 68661 0.66 0.579427
Target:  5'- aCGGCCgGCGG--GGCCCGCGucacccuuauaACCUCc- -3'
miRNA:   3'- -GCCGG-CGCCgcUCGGGUGC-----------UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 20220 0.66 0.579427
Target:  5'- gGGCCGCgcaGGCGAccccGCCCAagaaGAUCagGAg -3'
miRNA:   3'- gCCGGCG---CCGCU----CGGGUg---CUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 141394 0.66 0.579427
Target:  5'- gGGCaaacaGCGGCGuGUCCGgCGAUCggugCGGg -3'
miRNA:   3'- gCCGg----CGCCGCuCGGGU-GCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 124674 0.66 0.579427
Target:  5'- aCGGCCugcGCGaGgGGGCCCACGgggaGCacaUCGGc -3'
miRNA:   3'- -GCCGG---CGC-CgCUCGGGUGC----UGg--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 101534 0.66 0.579427
Target:  5'- aGGCCuucGUGGCGcGCCUGCGcCCggCGGa -3'
miRNA:   3'- gCCGG---CGCCGCuCGGGUGCuGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 99362 0.66 0.579427
Target:  5'- gCGGUCGuCGGCGGcgucguGCaCCGCcuCCUCGAc -3'
miRNA:   3'- -GCCGGC-GCCGCU------CG-GGUGcuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 60747 0.66 0.579427
Target:  5'- aGGCaGCGGCG-GCUCGCGAaggCGGu -3'
miRNA:   3'- gCCGgCGCCGCuCGGGUGCUggaGCU- -5'
29505 3' -63.7 NC_006151.1 + 29140 0.66 0.579427
Target:  5'- -aGUCGCGG-GAGCgcgcgugacccgCCGCGACCUCu- -3'
miRNA:   3'- gcCGGCGCCgCUCG------------GGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 14064 0.66 0.579427
Target:  5'- gGGUgCGUGGCGgcccGGCCgACGGCaCUCGc -3'
miRNA:   3'- gCCG-GCGCCGC----UCGGgUGCUG-GAGCu -5'
29505 3' -63.7 NC_006151.1 + 58659 0.66 0.579427
Target:  5'- aGGgCGCGGCGcagGGCcgCCAUGACCgCGc -3'
miRNA:   3'- gCCgGCGCCGC---UCG--GGUGCUGGaGCu -5'
29505 3' -63.7 NC_006151.1 + 121371 0.66 0.57847
Target:  5'- gCGGaCgGCGGCGAggagaccGCCUuCGACUUUGGg -3'
miRNA:   3'- -GCC-GgCGCCGCU-------CGGGuGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 78663 0.66 0.57847
Target:  5'- gCGGCCGgGGCGcgggugcuggacgGGCuCUACGccggccgggGCCUCGu -3'
miRNA:   3'- -GCCGGCgCCGC-------------UCG-GGUGC---------UGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 114920 0.66 0.569867
Target:  5'- aCGGCCcCGGCGucGCgCuCGGCCUCc- -3'
miRNA:   3'- -GCCGGcGCCGCu-CGgGuGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 132043 0.66 0.569867
Target:  5'- gCGGCgCGCGGC-AGCgCgGCGGagaacggcggcuCCUCGAc -3'
miRNA:   3'- -GCCG-GCGCCGcUCG-GgUGCU------------GGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.