miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 5' -57.2 NC_006151.1 + 23085 1.11 0.001491
Target:  5'- uUGUCGAGGUCGCUGGAGGUCAGCUCCu -3'
miRNA:   3'- -ACAGCUCCAGCGACCUCCAGUCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 23196 1.06 0.003228
Target:  5'- uUGUCGAGGUCGCUGGAGGUCAGCUCg -3'
miRNA:   3'- -ACAGCUCCAGCGACCUCCAGUCGAGg -5'
29505 5' -57.2 NC_006151.1 + 119134 0.77 0.304124
Target:  5'- cGUgGGGG-CGCUGGuGuUCAGCUCCa -3'
miRNA:   3'- aCAgCUCCaGCGACCuCcAGUCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 133324 0.74 0.404939
Target:  5'- gUGUCGAGGcgCGCcGGGcGGcCGGUUCCg -3'
miRNA:   3'- -ACAGCUCCa-GCGaCCU-CCaGUCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 124588 0.73 0.485969
Target:  5'- cGUCGAGGagG-UGGAGG-CGcGCUCCg -3'
miRNA:   3'- aCAGCUCCagCgACCUCCaGU-CGAGG- -5'
29505 5' -57.2 NC_006151.1 + 103884 0.72 0.503102
Target:  5'- gGUCGAGGcgcgccaccuggCGCUGGAGGUggcgcgcgCGGCcgCCg -3'
miRNA:   3'- aCAGCUCCa-----------GCGACCUCCA--------GUCGa-GG- -5'
29505 5' -57.2 NC_006151.1 + 9334 0.71 0.583974
Target:  5'- gGgagCGGGGUCGCUcGGGGGaaGGUUUCa -3'
miRNA:   3'- aCa--GCUCCAGCGA-CCUCCagUCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 5493 0.71 0.594061
Target:  5'- aGUUGGGGUUGgaGGAGacggGGCUCCg -3'
miRNA:   3'- aCAGCUCCAGCgaCCUCcag-UCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 67830 0.71 0.604175
Target:  5'- cGUCGucGUCGC-GGGGGcUCAGCagCCc -3'
miRNA:   3'- aCAGCucCAGCGaCCUCC-AGUCGa-GG- -5'
29505 5' -57.2 NC_006151.1 + 19755 0.7 0.634611
Target:  5'- cGUUGAGGUCGCcgucGAGGUCAuCgucgCCg -3'
miRNA:   3'- aCAGCUCCAGCGac--CUCCAGUcGa---GG- -5'
29505 5' -57.2 NC_006151.1 + 130198 0.7 0.644763
Target:  5'- -cUCGGGGUgccCGCU-GAGGacgcgCAGCUCCg -3'
miRNA:   3'- acAGCUCCA---GCGAcCUCCa----GUCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 139197 0.7 0.654905
Target:  5'- gGUCGGGG-CGCUGGAGcuccuggCGGCgacgcugCCg -3'
miRNA:   3'- aCAGCUCCaGCGACCUCca-----GUCGa------GG- -5'
29505 5' -57.2 NC_006151.1 + 133610 0.7 0.654905
Target:  5'- gGcCGAGGggCGuCUGGGGGUCgcGGCggCCg -3'
miRNA:   3'- aCaGCUCCa-GC-GACCUCCAG--UCGa-GG- -5'
29505 5' -57.2 NC_006151.1 + 42812 0.69 0.68519
Target:  5'- cGUCGAGGUCGUgUGGGGGagAGagaCg -3'
miRNA:   3'- aCAGCUCCAGCG-ACCUCCagUCgagG- -5'
29505 5' -57.2 NC_006151.1 + 13102 0.69 0.68519
Target:  5'- aGggaGAGGUCGC-GGcGGGUCAcgcgcGCUCCc -3'
miRNA:   3'- aCag-CUCCAGCGaCC-UCCAGU-----CGAGG- -5'
29505 5' -57.2 NC_006151.1 + 111851 0.69 0.715085
Target:  5'- cGUCGGGGggCGCUcGGGGUC-GCaggCCg -3'
miRNA:   3'- aCAGCUCCa-GCGAcCUCCAGuCGa--GG- -5'
29505 5' -57.2 NC_006151.1 + 22900 0.68 0.753928
Target:  5'- aUGUCaGAGGgCGagacGaAGGUCGGCUCCg -3'
miRNA:   3'- -ACAG-CUCCaGCga--CcUCCAGUCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 27460 0.68 0.769024
Target:  5'- gGUCGGGGgcgggcggucgaGCgGGGGGUCGGCg-- -3'
miRNA:   3'- aCAGCUCCag----------CGaCCUCCAGUCGagg -5'
29505 5' -57.2 NC_006151.1 + 88112 0.68 0.772751
Target:  5'- cGUCGAGGUCcgacaGCgGGcGGgc-GCUCCg -3'
miRNA:   3'- aCAGCUCCAG-----CGaCCuCCaguCGAGG- -5'
29505 5' -57.2 NC_006151.1 + 62235 0.67 0.788365
Target:  5'- cGUCGAGGUCGUcguguccggcuacgUGcAGGU--GCUCCc -3'
miRNA:   3'- aCAGCUCCAGCG--------------ACcUCCAguCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.