miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 21040 0.67 0.938073
Target:  5'- cUGAaGAgGAcGCCCcCGACGcgcggggucagggcgGCCAGGg -3'
miRNA:   3'- -ACUaCUgCUaCGGGuGCUGC---------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 142264 0.67 0.93613
Target:  5'- ---cGGCGAggagcGCCCcguccCGGCGGCCAGa -3'
miRNA:   3'- acuaCUGCUa----CGGGu----GCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 52889 0.67 0.93613
Target:  5'- cGAaGGCGccGUGCgCACGAUgguguaGGCCGGGa -3'
miRNA:   3'- aCUaCUGC--UACGgGUGCUG------CUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 2496 0.67 0.93613
Target:  5'- cGAaGGCGgcGCCCGCGucaaaGuCCGGGu -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCug---CuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 99588 0.67 0.93613
Target:  5'- aGGUGGCGGcgGCCgaGCGcCGcGCCGGGc -3'
miRNA:   3'- aCUACUGCUa-CGGg-UGCuGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 55149 0.67 0.935639
Target:  5'- gGA-GACGGUGCgcucguaCCuCGACGAgaCCGGGg -3'
miRNA:   3'- aCUaCUGCUACG-------GGuGCUGCU--GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 122677 0.67 0.931106
Target:  5'- cGccGA-GGUGCgCGCGGCGGCCGuGGa -3'
miRNA:   3'- aCuaCUgCUACGgGUGCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 120161 0.67 0.931106
Target:  5'- cGGUGACGGUgacGCUCGcCGACGGCaucguGGc -3'
miRNA:   3'- aCUACUGCUA---CGGGU-GCUGCUGgu---CC- -5'
29506 5' -54.3 NC_006151.1 + 38086 0.68 0.902381
Target:  5'- aGGUGACGGccgcgcUGCUCGCGcuccgcgacGCGAuccCCGGGg -3'
miRNA:   3'- aCUACUGCU------ACGGGUGC---------UGCU---GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 21443 0.68 0.902381
Target:  5'- cGgcGugGGgugGCCCcCGGCGGCguGGu -3'
miRNA:   3'- aCuaCugCUa--CGGGuGCUGCUGguCC- -5'
29506 5' -54.3 NC_006151.1 + 130663 0.68 0.902381
Target:  5'- -cGUGaACGucaGUGCCCGCGgggcGCGGCgCAGGa -3'
miRNA:   3'- acUAC-UGC---UACGGGUGC----UGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 105136 0.68 0.895924
Target:  5'- cGcUGACGAcGCgCGuCGACGGCCGcGGg -3'
miRNA:   3'- aCuACUGCUaCGgGU-GCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 99088 0.68 0.895924
Target:  5'- -cGUGGCGcggcGCCUGCGcACGgACCAGGg -3'
miRNA:   3'- acUACUGCua--CGGGUGC-UGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 73183 0.68 0.902381
Target:  5'- cGAUGAacucgcacacCGAcugcUGCCCGCG--GGCCAGGc -3'
miRNA:   3'- aCUACU----------GCU----ACGGGUGCugCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 87943 0.68 0.902381
Target:  5'- aUGAUGACcag---CACGAUGGCCAGGa -3'
miRNA:   3'- -ACUACUGcuacggGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 133691 0.68 0.902381
Target:  5'- cGA-GGCGGUcucGUCgGCGGCGACCcGGg -3'
miRNA:   3'- aCUaCUGCUA---CGGgUGCUGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 57583 0.68 0.908603
Target:  5'- --uUGACGuagGCgCACG-UGACCAGGc -3'
miRNA:   3'- acuACUGCua-CGgGUGCuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 95121 0.68 0.908603
Target:  5'- cGAUGGCGGcguugagGCgCCGCGcCG-CCGGGu -3'
miRNA:   3'- aCUACUGCUa------CG-GGUGCuGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 51387 0.68 0.908603
Target:  5'- -cGUGACGcgGCCCGgGGCGAgCGc- -3'
miRNA:   3'- acUACUGCuaCGGGUgCUGCUgGUcc -5'
29506 5' -54.3 NC_006151.1 + 67292 0.68 0.895924
Target:  5'- cUGGUGccGCGAcGCgCGCGugGACCAc- -3'
miRNA:   3'- -ACUAC--UGCUaCGgGUGCugCUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.