Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29506 | 5' | -54.3 | NC_006151.1 | + | 105136 | 0.68 | 0.895924 |
Target: 5'- cGcUGACGAcGCgCGuCGACGGCCGcGGg -3' miRNA: 3'- aCuACUGCUaCGgGU-GCUGCUGGU-CC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 96653 | 0.68 | 0.908603 |
Target: 5'- cGgcGGCGAggGCCCggGCGACGuCCucGGGg -3' miRNA: 3'- aCuaCUGCUa-CGGG--UGCUGCuGG--UCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 51387 | 0.68 | 0.908603 |
Target: 5'- -cGUGACGcgGCCCGgGGCGAgCGc- -3' miRNA: 3'- acUACUGCuaCGGGUgCUGCUgGUcc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 95121 | 0.68 | 0.908603 |
Target: 5'- cGAUGGCGGcguugagGCgCCGCGcCG-CCGGGu -3' miRNA: 3'- aCUACUGCUa------CG-GGUGCuGCuGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 57583 | 0.68 | 0.908603 |
Target: 5'- --uUGACGuagGCgCACG-UGACCAGGc -3' miRNA: 3'- acuACUGCua-CGgGUGCuGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 133691 | 0.68 | 0.902381 |
Target: 5'- cGA-GGCGGUcucGUCgGCGGCGACCcGGg -3' miRNA: 3'- aCUaCUGCUA---CGGgUGCUGCUGGuCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 87943 | 0.68 | 0.902381 |
Target: 5'- aUGAUGACcag---CACGAUGGCCAGGa -3' miRNA: 3'- -ACUACUGcuacggGUGCUGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 73183 | 0.68 | 0.902381 |
Target: 5'- cGAUGAacucgcacacCGAcugcUGCCCGCG--GGCCAGGc -3' miRNA: 3'- aCUACU----------GCU----ACGGGUGCugCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 38086 | 0.68 | 0.902381 |
Target: 5'- aGGUGACGGccgcgcUGCUCGCGcuccgcgacGCGAuccCCGGGg -3' miRNA: 3'- aCUACUGCU------ACGGGUGC---------UGCU---GGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 21443 | 0.68 | 0.902381 |
Target: 5'- cGgcGugGGgugGCCCcCGGCGGCguGGu -3' miRNA: 3'- aCuaCugCUa--CGGGuGCUGCUGguCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 130663 | 0.68 | 0.902381 |
Target: 5'- -cGUGaACGucaGUGCCCGCGgggcGCGGCgCAGGa -3' miRNA: 3'- acUAC-UGC---UACGGGUGC----UGCUG-GUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 73978 | 0.69 | 0.837137 |
Target: 5'- -cGUGGCcAUGCCCGCGuccggcgccaccgaGGCCAGGa -3' miRNA: 3'- acUACUGcUACGGGUGCug------------CUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 49569 | 0.69 | 0.841239 |
Target: 5'- gGAUGAUGGaGCCCGCGcucgccggcgcccCGGCCAGc -3' miRNA: 3'- aCUACUGCUaCGGGUGCu------------GCUGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 94185 | 0.69 | 0.844486 |
Target: 5'- uUGAcguUGACGAggucGUCCGCGGCGGagAGGa -3' miRNA: 3'- -ACU---ACUGCUa---CGGGUGCUGCUggUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 131738 | 0.69 | 0.844486 |
Target: 5'- gGGUGGCGG-GCCCGggcgaGGCGACCGu- -3' miRNA: 3'- aCUACUGCUaCGGGUg----CUGCUGGUcc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 29586 | 0.69 | 0.844486 |
Target: 5'- gGAUcgcGGCGGcUGCggCCGCGGCGGCgGGGg -3' miRNA: 3'- aCUA---CUGCU-ACG--GGUGCUGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 46385 | 0.69 | 0.860246 |
Target: 5'- aGA-GGCGA-GCCC-CGAUGAgccaCCAGGg -3' miRNA: 3'- aCUaCUGCUaCGGGuGCUGCU----GGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 64462 | 0.69 | 0.867819 |
Target: 5'- gGAUGGCGGcgcGCgCCGCcGCGGCgGGGa -3' miRNA: 3'- aCUACUGCUa--CG-GGUGcUGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 69591 | 0.69 | 0.867819 |
Target: 5'- ---cGACGAgcucgGCCgCGCGGCGcACCAGc -3' miRNA: 3'- acuaCUGCUa----CGG-GUGCUGC-UGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 19833 | 0.69 | 0.836311 |
Target: 5'- cGGUGACGggGCCCggggucgucucgGCGGagaGGCuCGGGg -3' miRNA: 3'- aCUACUGCuaCGGG------------UGCUg--CUG-GUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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