miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 65284 0.7 0.827949
Target:  5'- aGAUGuuGccGCCCuuGACGuCCAGGu -3'
miRNA:   3'- aCUACugCuaCGGGugCUGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 46616 0.7 0.80182
Target:  5'- aGAgacgGAccCGGUGCCUGCGACGcgGCCGGa -3'
miRNA:   3'- aCUa---CU--GCUACGGGUGCUGC--UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 119250 0.7 0.80182
Target:  5'- aGGUGGCGgcGCCCuaccUGGCCGGGa -3'
miRNA:   3'- aCUACUGCuaCGGGugcuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 24959 0.69 0.875178
Target:  5'- -cGUGACGAUGCgCGCcGCGGCCu-- -3'
miRNA:   3'- acUACUGCUACGgGUGcUGCUGGucc -5'
29506 5' -54.3 NC_006151.1 + 49569 0.69 0.841239
Target:  5'- gGAUGAUGGaGCCCGCGcucgccggcgcccCGGCCAGc -3'
miRNA:   3'- aCUACUGCUaCGGGUGCu------------GCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 73978 0.69 0.837137
Target:  5'- -cGUGGCcAUGCCCGCGuccggcgccaccgaGGCCAGGa -3'
miRNA:   3'- acUACUGcUACGGGUGCug------------CUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 69591 0.69 0.867819
Target:  5'- ---cGACGAgcucgGCCgCGCGGCGcACCAGc -3'
miRNA:   3'- acuaCUGCUa----CGG-GUGCUGC-UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 94185 0.69 0.844486
Target:  5'- uUGAcguUGACGAggucGUCCGCGGCGGagAGGa -3'
miRNA:   3'- -ACU---ACUGCUa---CGGGUGCUGCUggUCC- -5'
29506 5' -54.3 NC_006151.1 + 131738 0.69 0.844486
Target:  5'- gGGUGGCGG-GCCCGggcgaGGCGACCGu- -3'
miRNA:   3'- aCUACUGCUaCGGGUg----CUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 46385 0.69 0.860246
Target:  5'- aGA-GGCGA-GCCC-CGAUGAgccaCCAGGg -3'
miRNA:   3'- aCUaCUGCUaCGGGuGCUGCU----GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 64462 0.69 0.867819
Target:  5'- gGAUGGCGGcgcGCgCCGCcGCGGCgGGGa -3'
miRNA:   3'- aCUACUGCUa--CG-GGUGcUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 105755 0.69 0.836311
Target:  5'- -cGUGGCGgcGCgCCugGGCGACCGc- -3'
miRNA:   3'- acUACUGCuaCG-GGugCUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 19833 0.69 0.836311
Target:  5'- cGGUGACGggGCCCggggucgucucgGCGGagaGGCuCGGGg -3'
miRNA:   3'- aCUACUGCuaCGGG------------UGCUg--CUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 29586 0.69 0.844486
Target:  5'- gGAUcgcGGCGGcUGCggCCGCGGCGGCgGGGg -3'
miRNA:   3'- aCUA---CUGCU-ACG--GGUGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 99088 0.68 0.895924
Target:  5'- -cGUGGCGcggcGCCUGCGcACGgACCAGGg -3'
miRNA:   3'- acUACUGCua--CGGGUGC-UGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 105136 0.68 0.895924
Target:  5'- cGcUGACGAcGCgCGuCGACGGCCGcGGg -3'
miRNA:   3'- aCuACUGCUaCGgGU-GCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 130663 0.68 0.902381
Target:  5'- -cGUGaACGucaGUGCCCGCGgggcGCGGCgCAGGa -3'
miRNA:   3'- acUAC-UGC---UACGGGUGC----UGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 21443 0.68 0.902381
Target:  5'- cGgcGugGGgugGCCCcCGGCGGCguGGu -3'
miRNA:   3'- aCuaCugCUa--CGGGuGCUGCUGguCC- -5'
29506 5' -54.3 NC_006151.1 + 38086 0.68 0.902381
Target:  5'- aGGUGACGGccgcgcUGCUCGCGcuccgcgacGCGAuccCCGGGg -3'
miRNA:   3'- aCUACUGCU------ACGGGUGC---------UGCU---GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 73183 0.68 0.902381
Target:  5'- cGAUGAacucgcacacCGAcugcUGCCCGCG--GGCCAGGc -3'
miRNA:   3'- aCUACU----------GCU----ACGGGUGCugCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.