miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 20996 0.68 0.882318
Target:  5'- cGAgGACGGcgcUGCCgGCGACGugCAc- -3'
miRNA:   3'- aCUaCUGCU---ACGGgUGCUGCugGUcc -5'
29506 5' -54.3 NC_006151.1 + 10911 0.68 0.882318
Target:  5'- cGcgGAcCGGggucggGCCCACGGCG-CCgAGGg -3'
miRNA:   3'- aCuaCU-GCUa-----CGGGUGCUGCuGG-UCC- -5'
29506 5' -54.3 NC_006151.1 + 52810 0.68 0.895924
Target:  5'- uUGGUGAUGcgGCCgGCGuuGGCCGc- -3'
miRNA:   3'- -ACUACUGCuaCGGgUGCugCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 14194 0.68 0.895924
Target:  5'- cGGUGACGucggcaucgGCCUcgACGACGACgaucgCGGGa -3'
miRNA:   3'- aCUACUGCua-------CGGG--UGCUGCUG-----GUCC- -5'
29506 5' -54.3 NC_006151.1 + 130663 0.68 0.902381
Target:  5'- -cGUGaACGucaGUGCCCGCGgggcGCGGCgCAGGa -3'
miRNA:   3'- acUAC-UGC---UACGGGUGC----UGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 96653 0.68 0.908603
Target:  5'- cGgcGGCGAggGCCCggGCGACGuCCucGGGg -3'
miRNA:   3'- aCuaCUGCUa-CGGG--UGCUGCuGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 51387 0.68 0.908603
Target:  5'- -cGUGACGcgGCCCGgGGCGAgCGc- -3'
miRNA:   3'- acUACUGCuaCGGGUgCUGCUgGUcc -5'
29506 5' -54.3 NC_006151.1 + 95121 0.68 0.908603
Target:  5'- cGAUGGCGGcguugagGCgCCGCGcCG-CCGGGu -3'
miRNA:   3'- aCUACUGCUa------CG-GGUGCuGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 57583 0.68 0.908603
Target:  5'- --uUGACGuagGCgCACG-UGACCAGGc -3'
miRNA:   3'- acuACUGCua-CGgGUGCuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 133691 0.68 0.902381
Target:  5'- cGA-GGCGGUcucGUCgGCGGCGACCcGGg -3'
miRNA:   3'- aCUaCUGCUA---CGGgUGCUGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 87943 0.68 0.902381
Target:  5'- aUGAUGACcag---CACGAUGGCCAGGa -3'
miRNA:   3'- -ACUACUGcuacggGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 73183 0.68 0.902381
Target:  5'- cGAUGAacucgcacacCGAcugcUGCCCGCG--GGCCAGGc -3'
miRNA:   3'- aCUACU----------GCU----ACGGGUGCugCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 56999 0.68 0.895924
Target:  5'- cGAaGAUGG-GCuCCAUGugGGCCAGa -3'
miRNA:   3'- aCUaCUGCUaCG-GGUGCugCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 67292 0.68 0.895924
Target:  5'- cUGGUGccGCGAcGCgCGCGugGACCAc- -3'
miRNA:   3'- -ACUAC--UGCUaCGgGUGCugCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 99088 0.68 0.895924
Target:  5'- -cGUGGCGcggcGCCUGCGcACGgACCAGGg -3'
miRNA:   3'- acUACUGCua--CGGGUGC-UGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 105136 0.68 0.895924
Target:  5'- cGcUGACGAcGCgCGuCGACGGCCGcGGg -3'
miRNA:   3'- aCuACUGCUaCGgGU-GCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 38086 0.68 0.902381
Target:  5'- aGGUGACGGccgcgcUGCUCGCGcuccgcgacGCGAuccCCGGGg -3'
miRNA:   3'- aCUACUGCU------ACGGGUGC---------UGCU---GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 79762 0.67 0.920335
Target:  5'- ----cGCGGguccccgGUCCACGGCGGCCGGa -3'
miRNA:   3'- acuacUGCUa------CGGGUGCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 39385 0.67 0.914589
Target:  5'- cGAgGACug-GCCCGCgGACGGCCcGGc -3'
miRNA:   3'- aCUaCUGcuaCGGGUG-CUGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 87432 0.67 0.920335
Target:  5'- cGGUGGCcGUGCCCGCcGCcGCCGcGGc -3'
miRNA:   3'- aCUACUGcUACGGGUGcUGcUGGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.