miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 62007 0.71 0.774301
Target:  5'- gGGUGACGugcgcgccGCCCugG-CGGCCAGc -3'
miRNA:   3'- aCUACUGCua------CGGGugCuGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 38911 0.71 0.774301
Target:  5'- aGGUGGCccgcGCCU-CGugGACCAGGa -3'
miRNA:   3'- aCUACUGcua-CGGGuGCugCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 24634 0.71 0.774301
Target:  5'- aGGUaGGCGA-GCCCGCGgagcACGGCCcGGa -3'
miRNA:   3'- aCUA-CUGCUaCGGGUGC----UGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 118218 0.71 0.774301
Target:  5'- gUGGUGGCGGgcGCCCG-GACcACCGGGc -3'
miRNA:   3'- -ACUACUGCUa-CGGGUgCUGcUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 92730 0.71 0.774301
Target:  5'- gUGGUGGCcAUGCUCACGccggcGCGGCaCGGGc -3'
miRNA:   3'- -ACUACUGcUACGGGUGC-----UGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 6269 0.71 0.778042
Target:  5'- cGGacGCGAUGCCCucuuccucggccgcgGCGGCGgccGCCAGGa -3'
miRNA:   3'- aCUacUGCUACGGG---------------UGCUGC---UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 81691 0.71 0.782689
Target:  5'- cGgcGACGGUcGCCCGCG-CGagguccaGCCGGGg -3'
miRNA:   3'- aCuaCUGCUA-CGGGUGCuGC-------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 41477 0.71 0.783614
Target:  5'- cGAUGACGAcgGCgaCCGCGugGcGCgAGGg -3'
miRNA:   3'- aCUACUGCUa-CG--GGUGCugC-UGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 116318 0.71 0.784538
Target:  5'- cGAUGACGccgcgcucgcgcggGCCCGCGGCGuaguACCGcGGg -3'
miRNA:   3'- aCUACUGCua------------CGGGUGCUGC----UGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 122449 0.71 0.787301
Target:  5'- gGA-GGCGgcGUCCACGGCGgcggcgggcgccgagGCCGGGg -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCUGC---------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 80795 0.71 0.787301
Target:  5'- cGGUGAUGGccgccCCCACGACGgaggccaccacguagGCCGGGa -3'
miRNA:   3'- aCUACUGCUac---GGGUGCUGC---------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 133613 0.7 0.79279
Target:  5'- cGAggGGCGucugggGgUCGCGGCGGCCGGGg -3'
miRNA:   3'- aCUa-CUGCua----CgGGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 119250 0.7 0.80182
Target:  5'- aGGUGGCGgcGCCCuaccUGGCCGGGa -3'
miRNA:   3'- aCUACUGCuaCGGGugcuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 46616 0.7 0.80182
Target:  5'- aGAgacgGAccCGGUGCCUGCGACGcgGCCGGa -3'
miRNA:   3'- aCUa---CU--GCUACGGGUGCUGC--UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 133272 0.7 0.809815
Target:  5'- cUGAaGGCGA-GCCgGCGGCGGCCcacgucgAGGu -3'
miRNA:   3'- -ACUaCUGCUaCGGgUGCUGCUGG-------UCC- -5'
29506 5' -54.3 NC_006151.1 + 68303 0.7 0.810696
Target:  5'- ----nGCGcgcGCCCACGACGGCgAGGg -3'
miRNA:   3'- acuacUGCua-CGGGUGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 20547 0.7 0.810696
Target:  5'- ---cGGCGggGUCCACGACG-CgCAGGc -3'
miRNA:   3'- acuaCUGCuaCGGGUGCUGCuG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 129511 0.7 0.810696
Target:  5'- cGAUGACGAgccgcuUGCCgC-CGACGGgggggcCCGGGg -3'
miRNA:   3'- aCUACUGCU------ACGG-GuGCUGCU------GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 106225 0.7 0.810696
Target:  5'- cGAccUGAUGGUGgCCGCGGUGGCCGGc -3'
miRNA:   3'- aCU--ACUGCUACgGGUGCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 21835 0.7 0.819408
Target:  5'- cGGUGAgGAUGUUCACGcCGucgacggacACCAGGc -3'
miRNA:   3'- aCUACUgCUACGGGUGCuGC---------UGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.