miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 14194 0.68 0.895924
Target:  5'- cGGUGACGucggcaucgGCCUcgACGACGACgaucgCGGGa -3'
miRNA:   3'- aCUACUGCua-------CGGG--UGCUGCUG-----GUCC- -5'
29506 5' -54.3 NC_006151.1 + 56999 0.68 0.895924
Target:  5'- cGAaGAUGG-GCuCCAUGugGGCCAGa -3'
miRNA:   3'- aCUaCUGCUaCG-GGUGCugCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 67292 0.68 0.895924
Target:  5'- cUGGUGccGCGAcGCgCGCGugGACCAc- -3'
miRNA:   3'- -ACUAC--UGCUaCGgGUGCugCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 99088 0.68 0.895924
Target:  5'- -cGUGGCGcggcGCCUGCGcACGgACCAGGg -3'
miRNA:   3'- acUACUGCua--CGGGUGC-UGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 105136 0.68 0.895924
Target:  5'- cGcUGACGAcGCgCGuCGACGGCCGcGGg -3'
miRNA:   3'- aCuACUGCUaCGgGU-GCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 20314 0.68 0.889235
Target:  5'- -cGUGGCGuUGgCgGCGGCGAgCAGGa -3'
miRNA:   3'- acUACUGCuACgGgUGCUGCUgGUCC- -5'
29506 5' -54.3 NC_006151.1 + 103949 0.68 0.889235
Target:  5'- aGAaGAUGgcGCUCGCGGCGcGCCAGc -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCUGC-UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 50937 0.68 0.889235
Target:  5'- ---gGGCgGAUGCCCACG--GACCAGa -3'
miRNA:   3'- acuaCUG-CUACGGGUGCugCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 10911 0.68 0.882318
Target:  5'- cGcgGAcCGGggucggGCCCACGGCG-CCgAGGg -3'
miRNA:   3'- aCuaCU-GCUa-----CGGGUGCUGCuGG-UCC- -5'
29506 5' -54.3 NC_006151.1 + 20996 0.68 0.882318
Target:  5'- cGAgGACGGcgcUGCCgGCGACGugCAc- -3'
miRNA:   3'- aCUaCUGCU---ACGGgUGCUGCugGUcc -5'
29506 5' -54.3 NC_006151.1 + 92659 0.68 0.882318
Target:  5'- ---aGGCGcucGCCCugcugcCGGCGGCCGGGg -3'
miRNA:   3'- acuaCUGCua-CGGGu-----GCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 24959 0.69 0.875178
Target:  5'- -cGUGACGAUGCgCGCcGCGGCCu-- -3'
miRNA:   3'- acUACUGCUACGgGUGcUGCUGGucc -5'
29506 5' -54.3 NC_006151.1 + 69591 0.69 0.867819
Target:  5'- ---cGACGAgcucgGCCgCGCGGCGcACCAGc -3'
miRNA:   3'- acuaCUGCUa----CGG-GUGCUGC-UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 64462 0.69 0.867819
Target:  5'- gGAUGGCGGcgcGCgCCGCcGCGGCgGGGa -3'
miRNA:   3'- aCUACUGCUa--CG-GGUGcUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 46385 0.69 0.860246
Target:  5'- aGA-GGCGA-GCCC-CGAUGAgccaCCAGGg -3'
miRNA:   3'- aCUaCUGCUaCGGGuGCUGCU----GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 94185 0.69 0.844486
Target:  5'- uUGAcguUGACGAggucGUCCGCGGCGGagAGGa -3'
miRNA:   3'- -ACU---ACUGCUa---CGGGUGCUGCUggUCC- -5'
29506 5' -54.3 NC_006151.1 + 131738 0.69 0.844486
Target:  5'- gGGUGGCGG-GCCCGggcgaGGCGACCGu- -3'
miRNA:   3'- aCUACUGCUaCGGGUg----CUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 29586 0.69 0.844486
Target:  5'- gGAUcgcGGCGGcUGCggCCGCGGCGGCgGGGg -3'
miRNA:   3'- aCUA---CUGCU-ACG--GGUGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 49569 0.69 0.841239
Target:  5'- gGAUGAUGGaGCCCGCGcucgccggcgcccCGGCCAGc -3'
miRNA:   3'- aCUACUGCUaCGGGUGCu------------GCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 73978 0.69 0.837137
Target:  5'- -cGUGGCcAUGCCCGCGuccggcgccaccgaGGCCAGGa -3'
miRNA:   3'- acUACUGcUACGGGUGCug------------CUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.