miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 36238 0.66 0.949773
Target:  5'- gGAgGACGA-GCCCGggucccCGGCcGCCGGGu -3'
miRNA:   3'- aCUaCUGCUaCGGGU------GCUGcUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 36382 0.66 0.949773
Target:  5'- aGAgGcCGggGCCCcCGGCGGCCccGGGc -3'
miRNA:   3'- aCUaCuGCuaCGGGuGCUGCUGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 38086 0.68 0.902381
Target:  5'- aGGUGACGGccgcgcUGCUCGCGcuccgcgacGCGAuccCCGGGg -3'
miRNA:   3'- aCUACUGCU------ACGGGUGC---------UGCU---GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 38911 0.71 0.774301
Target:  5'- aGGUGGCccgcGCCU-CGugGACCAGGa -3'
miRNA:   3'- aCUACUGcua-CGGGuGCugCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 39385 0.67 0.914589
Target:  5'- cGAgGACug-GCCCGCgGACGGCCcGGc -3'
miRNA:   3'- aCUaCUGcuaCGGGUG-CUGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 41477 0.71 0.783614
Target:  5'- cGAUGACGAcgGCgaCCGCGugGcGCgAGGg -3'
miRNA:   3'- aCUACUGCUa-CG--GGUGCugC-UGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 43680 0.72 0.735863
Target:  5'- cUGgcGACGAgggGCCCGCcggcGCGACgGGGa -3'
miRNA:   3'- -ACuaCUGCUa--CGGGUGc---UGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 44671 0.66 0.945462
Target:  5'- ---cGACacAUGCgCACGGCGGCCGGcGg -3'
miRNA:   3'- acuaCUGc-UACGgGUGCUGCUGGUC-C- -5'
29506 5' -54.3 NC_006151.1 + 45179 0.76 0.51343
Target:  5'- gGGUGGCG-UGCCCgccaccacggACGGCGACgGGGu -3'
miRNA:   3'- aCUACUGCuACGGG----------UGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 45284 0.66 0.957325
Target:  5'- gGGUGAgcggcggucguccCGAgGaCCCGCGA-GGCCGGGa -3'
miRNA:   3'- aCUACU-------------GCUaC-GGGUGCUgCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 45405 0.72 0.716061
Target:  5'- gUGGUGGUGGUGCCgGuguguUGugGGCCGGGg -3'
miRNA:   3'- -ACUACUGCUACGGgU-----GCugCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 46385 0.69 0.860246
Target:  5'- aGA-GGCGA-GCCC-CGAUGAgccaCCAGGg -3'
miRNA:   3'- aCUaCUGCUaCGGGuGCUGCU----GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 46518 0.66 0.949773
Target:  5'- gGAucUGACGGaggccuccgaGUCCGCgGACGACCAGa -3'
miRNA:   3'- aCU--ACUGCUa---------CGGGUG-CUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 46616 0.7 0.80182
Target:  5'- aGAgacgGAccCGGUGCCUGCGACGcgGCCGGa -3'
miRNA:   3'- aCUa---CU--GCUACGGGUGCUGC--UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 49569 0.69 0.841239
Target:  5'- gGAUGAUGGaGCCCGCGcucgccggcgcccCGGCCAGc -3'
miRNA:   3'- aCUACUGCUaCGGGUGCu------------GCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 50937 0.68 0.889235
Target:  5'- ---gGGCgGAUGCCCACG--GACCAGa -3'
miRNA:   3'- acuaCUG-CUACGGGUGCugCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 51055 0.68 0.895924
Target:  5'- gUGGUGGCGAUGgugaUgGCGGCGGCCu-- -3'
miRNA:   3'- -ACUACUGCUACg---GgUGCUGCUGGucc -5'
29506 5' -54.3 NC_006151.1 + 51172 0.74 0.593685
Target:  5'- aUGGUGACGugcaggGCCCGCuccACGACgAGGg -3'
miRNA:   3'- -ACUACUGCua----CGGGUGc--UGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 51387 0.68 0.908603
Target:  5'- -cGUGACGcgGCCCGgGGCGAgCGc- -3'
miRNA:   3'- acUACUGCuaCGGGUgCUGCUgGUcc -5'
29506 5' -54.3 NC_006151.1 + 52810 0.68 0.895924
Target:  5'- uUGGUGAUGcgGCCgGCGuuGGCCGc- -3'
miRNA:   3'- -ACUACUGCuaCGGgUGCugCUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.