miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 52889 0.67 0.93613
Target:  5'- cGAaGGCGccGUGCgCACGAUgguguaGGCCGGGa -3'
miRNA:   3'- aCUaCUGC--UACGgGUGCUG------CUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 54129 0.67 0.931106
Target:  5'- cUGcgGACGGgcucUGCCCcgGCGGCG-CCGcGGa -3'
miRNA:   3'- -ACuaCUGCU----ACGGG--UGCUGCuGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 55149 0.67 0.935639
Target:  5'- gGA-GACGGUGCgcucguaCCuCGACGAgaCCGGGg -3'
miRNA:   3'- aCUaCUGCUACG-------GGuGCUGCU--GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 55394 0.67 0.940915
Target:  5'- aGGUG-CGgcGCCUGCG-CGAgCAGGc -3'
miRNA:   3'- aCUACuGCuaCGGGUGCuGCUgGUCC- -5'
29506 5' -54.3 NC_006151.1 + 55551 0.66 0.9577
Target:  5'- gGgcGACGAcGCCUACGugG-CCAa- -3'
miRNA:   3'- aCuaCUGCUaCGGGUGCugCuGGUcc -5'
29506 5' -54.3 NC_006151.1 + 56082 0.66 0.9577
Target:  5'- cGA-GACGGUGUCCuGCGACGAguaCCGc- -3'
miRNA:   3'- aCUaCUGCUACGGG-UGCUGCU---GGUcc -5'
29506 5' -54.3 NC_006151.1 + 56999 0.68 0.895924
Target:  5'- cGAaGAUGG-GCuCCAUGugGGCCAGa -3'
miRNA:   3'- aCUaCUGCUaCG-GGUGCugCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 57204 0.66 0.953851
Target:  5'- cGA-GGCGAagGCCCGCu-CGACgAGGc -3'
miRNA:   3'- aCUaCUGCUa-CGGGUGcuGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 57449 0.71 0.76486
Target:  5'- ---cGGCGGccCCCGCGuCGGCCAGGu -3'
miRNA:   3'- acuaCUGCUacGGGUGCuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 57583 0.68 0.908603
Target:  5'- --uUGACGuagGCgCACG-UGACCAGGc -3'
miRNA:   3'- acuACUGCua-CGgGUGCuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 58498 0.72 0.735863
Target:  5'- ---gGAUGAUGCCCGCGcGCgGGCCGGc -3'
miRNA:   3'- acuaCUGCUACGGGUGC-UG-CUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 59138 0.66 0.945462
Target:  5'- gGGUGGC---GCCCGCGGgCGGguCCAGGc -3'
miRNA:   3'- aCUACUGcuaCGGGUGCU-GCU--GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 62007 0.71 0.774301
Target:  5'- gGGUGACGugcgcgccGCCCugG-CGGCCAGc -3'
miRNA:   3'- aCUACUGCua------CGGGugCuGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 63484 0.67 0.925841
Target:  5'- cGgcGGCGgcGCCCGaagaaGGUGGCCAGGu -3'
miRNA:   3'- aCuaCUGCuaCGGGUg----CUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 64462 0.69 0.867819
Target:  5'- gGAUGGCGGcgcGCgCCGCcGCGGCgGGGa -3'
miRNA:   3'- aCUACUGCUa--CG-GGUGcUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 65284 0.7 0.827949
Target:  5'- aGAUGuuGccGCCCuuGACGuCCAGGu -3'
miRNA:   3'- aCUACugCuaCGGGugCUGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 65607 0.67 0.914589
Target:  5'- cUGccGuACGAUccgGCCC-CGACGGCCAcGGg -3'
miRNA:   3'- -ACuaC-UGCUA---CGGGuGCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 65791 0.66 0.9577
Target:  5'- cGAUGGCGccGCCCggcGCGgACGuGCCGcGGu -3'
miRNA:   3'- aCUACUGCuaCGGG---UGC-UGC-UGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 66797 0.72 0.716061
Target:  5'- cGgcGGCGggGCCCggggacgacgACGGCGACgAGGa -3'
miRNA:   3'- aCuaCUGCuaCGGG----------UGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 67292 0.68 0.895924
Target:  5'- cUGGUGccGCGAcGCgCGCGugGACCAc- -3'
miRNA:   3'- -ACUAC--UGCUaCGgGUGCugCUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.