miRNA display CGI


Results 101 - 120 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 82141 0.67 0.925841
Target:  5'- cGcgGGCGG-GCCCgGCGGCu-CCAGGu -3'
miRNA:   3'- aCuaCUGCUaCGGG-UGCUGcuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 82689 0.75 0.523252
Target:  5'- cGAgGGCGGcgGCCCccGCGAgGGCCAGGa -3'
miRNA:   3'- aCUaCUGCUa-CGGG--UGCUgCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 86866 0.67 0.940448
Target:  5'- ---cGGCGAcuacaucuucgUGCCCGCGGCGcaguacaACCAGc -3'
miRNA:   3'- acuaCUGCU-----------ACGGGUGCUGC-------UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 87432 0.67 0.920335
Target:  5'- cGGUGGCcGUGCCCGCcGCcGCCGcGGc -3'
miRNA:   3'- aCUACUGcUACGGGUGcUGcUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 87943 0.68 0.902381
Target:  5'- aUGAUGACcag---CACGAUGGCCAGGa -3'
miRNA:   3'- -ACUACUGcuacggGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 87980 0.79 0.330242
Target:  5'- cGAUGACGAcgaucaugcUGCUCACGACgGGCCAGc -3'
miRNA:   3'- aCUACUGCU---------ACGGGUGCUG-CUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 88182 0.74 0.582467
Target:  5'- gUGGUaGACGGUGUCgGCGGCguggucgGACCAGGc -3'
miRNA:   3'- -ACUA-CUGCUACGGgUGCUG-------CUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 88771 0.66 0.949773
Target:  5'- uUGgcGACGGUcgcgcgcucGCCCuCGACGACgaCGGGc -3'
miRNA:   3'- -ACuaCUGCUA---------CGGGuGCUGCUG--GUCC- -5'
29506 5' -54.3 NC_006151.1 + 89606 0.76 0.484442
Target:  5'- gUGAgGACGAUGgCCGCGAgGAUgAGGa -3'
miRNA:   3'- -ACUaCUGCUACgGGUGCUgCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 90113 0.71 0.755301
Target:  5'- ---cGGCGAcGCCCAUGACGAggCAGGc -3'
miRNA:   3'- acuaCUGCUaCGGGUGCUGCUg-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 90730 0.66 0.9577
Target:  5'- cGgcGACGGUGgCgGCGGCGcCCucGGGg -3'
miRNA:   3'- aCuaCUGCUACgGgUGCUGCuGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 91404 0.67 0.914589
Target:  5'- ---cGACGuUGCCCAgGAacaCGGCCuGGg -3'
miRNA:   3'- acuaCUGCuACGGGUgCU---GCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 91569 0.67 0.940915
Target:  5'- cGAUGGCGgcGCgCGCGugcuCCAGGu -3'
miRNA:   3'- aCUACUGCuaCGgGUGCugcuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 92659 0.68 0.882318
Target:  5'- ---aGGCGcucGCCCugcugcCGGCGGCCGGGg -3'
miRNA:   3'- acuaCUGCua-CGGGu-----GCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 92730 0.71 0.774301
Target:  5'- gUGGUGGCcAUGCUCACGccggcGCGGCaCGGGc -3'
miRNA:   3'- -ACUACUGcUACGGGUGC-----UGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 94185 0.69 0.844486
Target:  5'- uUGAcguUGACGAggucGUCCGCGGCGGagAGGa -3'
miRNA:   3'- -ACU---ACUGCUa---CGGGUGCUGCUggUCC- -5'
29506 5' -54.3 NC_006151.1 + 95121 0.68 0.908603
Target:  5'- cGAUGGCGGcguugagGCgCCGCGcCG-CCGGGu -3'
miRNA:   3'- aCUACUGCUa------CG-GGUGCuGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 95535 0.72 0.716061
Target:  5'- cGAUGAgGAaggccaUGUCCugGAUGGgCAGGg -3'
miRNA:   3'- aCUACUgCU------ACGGGugCUGCUgGUCC- -5'
29506 5' -54.3 NC_006151.1 + 96065 0.66 0.9577
Target:  5'- aGcUGGCGAgcgaGCCgCGCGcGCGGCCGGc -3'
miRNA:   3'- aCuACUGCUa---CGG-GUGC-UGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 96653 0.68 0.908603
Target:  5'- cGgcGGCGAggGCCCggGCGACGuCCucGGGg -3'
miRNA:   3'- aCuaCUGCUa-CGGG--UGCUGCuGG--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.