miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 122677 0.67 0.931106
Target:  5'- cGccGA-GGUGCgCGCGGCGGCCGuGGa -3'
miRNA:   3'- aCuaCUgCUACGgGUGCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 122449 0.71 0.787301
Target:  5'- gGA-GGCGgcGUCCACGGCGgcggcgggcgccgagGCCGGGg -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCUGC---------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 122319 0.66 0.961322
Target:  5'- aGcUGGCGGUGC--GCGugGACCccgAGGa -3'
miRNA:   3'- aCuACUGCUACGggUGCugCUGG---UCC- -5'
29506 5' -54.3 NC_006151.1 + 120161 0.67 0.931106
Target:  5'- cGGUGACGGUgacGCUCGcCGACGGCaucguGGc -3'
miRNA:   3'- aCUACUGCUA---CGGGU-GCUGCUGgu---CC- -5'
29506 5' -54.3 NC_006151.1 + 119316 0.66 0.945462
Target:  5'- ---cGGCcucgcaGCCCGCGACGGCCccGGGc -3'
miRNA:   3'- acuaCUGcua---CGGGUGCUGCUGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 119250 0.7 0.80182
Target:  5'- aGGUGGCGgcGCCCuaccUGGCCGGGa -3'
miRNA:   3'- aCUACUGCuaCGGGugcuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 118218 0.71 0.774301
Target:  5'- gUGGUGGCGGgcGCCCG-GACcACCGGGc -3'
miRNA:   3'- -ACUACUGCUa-CGGGUgCUGcUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 116318 0.71 0.784538
Target:  5'- cGAUGACGccgcgcucgcgcggGCCCGCGGCGuaguACCGcGGg -3'
miRNA:   3'- aCUACUGCua------------CGGGUGCUGC----UGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 114033 0.73 0.655217
Target:  5'- -cGUGACGcUGCCCuuCGAccuCGGCCAGGc -3'
miRNA:   3'- acUACUGCuACGGGu-GCU---GCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 110899 0.67 0.93059
Target:  5'- aGGUGcuugucguGCGcGUGCCgcagguuCACGAgGGCCAGGg -3'
miRNA:   3'- aCUAC--------UGC-UACGG-------GUGCUgCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 109109 0.72 0.726003
Target:  5'- gUGA-GGCGAgccgccgGCCCGCGcccgcCGGCCGGGc -3'
miRNA:   3'- -ACUaCUGCUa------CGGGUGCu----GCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 107253 0.76 0.474953
Target:  5'- ---gGGCGAcGCCCGCGugGACCcGGc -3'
miRNA:   3'- acuaCUGCUaCGGGUGCugCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 106225 0.7 0.810696
Target:  5'- cGAccUGAUGGUGgCCGCGGUGGCCGGc -3'
miRNA:   3'- aCU--ACUGCUACgGGUGCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 105755 0.69 0.836311
Target:  5'- -cGUGGCGgcGCgCCugGGCGACCGc- -3'
miRNA:   3'- acUACUGCuaCG-GGugCUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 105675 0.72 0.726003
Target:  5'- ----uACGcgGCCUACGGCGGCgCGGGg -3'
miRNA:   3'- acuacUGCuaCGGGUGCUGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 105136 0.68 0.895924
Target:  5'- cGcUGACGAcGCgCGuCGACGGCCGcGGg -3'
miRNA:   3'- aCuACUGCUaCGgGU-GCUGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 104813 0.67 0.920335
Target:  5'- cGAccUGGCGGcgGCgCGCGACGGCCu-- -3'
miRNA:   3'- aCU--ACUGCUa-CGgGUGCUGCUGGucc -5'
29506 5' -54.3 NC_006151.1 + 104639 0.66 0.945462
Target:  5'- aGGUGACGuacGUGCgCGCGGCcGCCGa- -3'
miRNA:   3'- aCUACUGC---UACGgGUGCUGcUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 103949 0.68 0.889235
Target:  5'- aGAaGAUGgcGCUCGCGGCGcGCCAGc -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCUGC-UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 103470 0.66 0.949353
Target:  5'- cGGgcACGGUGCUCGCGGCGcuguggcGCCuGGu -3'
miRNA:   3'- aCUacUGCUACGGGUGCUGC-------UGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.