miRNA display CGI


Results 61 - 80 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 87943 0.68 0.902381
Target:  5'- aUGAUGACcag---CACGAUGGCCAGGa -3'
miRNA:   3'- -ACUACUGcuacggGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 87432 0.67 0.920335
Target:  5'- cGGUGGCcGUGCCCGCcGCcGCCGcGGc -3'
miRNA:   3'- aCUACUGcUACGGGUGcUGcUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 86866 0.67 0.940448
Target:  5'- ---cGGCGAcuacaucuucgUGCCCGCGGCGcaguacaACCAGc -3'
miRNA:   3'- acuaCUGCU-----------ACGGGUGCUGC-------UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 82689 0.75 0.523252
Target:  5'- cGAgGGCGGcgGCCCccGCGAgGGCCAGGa -3'
miRNA:   3'- aCUaCUGCUa-CGGG--UGCUgCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 82141 0.67 0.925841
Target:  5'- cGcgGGCGG-GCCCgGCGGCu-CCAGGu -3'
miRNA:   3'- aCuaCUGCUaCGGG-UGCUGcuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 81988 0.74 0.603913
Target:  5'- ---gGGC--UGCaCCACGGCGGCCAGGg -3'
miRNA:   3'- acuaCUGcuACG-GGUGCUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 81691 0.71 0.782689
Target:  5'- cGgcGACGGUcGCCCGCG-CGagguccaGCCGGGg -3'
miRNA:   3'- aCuaCUGCUA-CGGGUGCuGC-------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 81509 0.67 0.940915
Target:  5'- cGAgaGCGcgGCCCGCGugagcucgGCGGCCGcGGc -3'
miRNA:   3'- aCUacUGCuaCGGGUGC--------UGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 81395 0.66 0.949773
Target:  5'- ----cGCGgcGCCCAgGuuGGCCAGGg -3'
miRNA:   3'- acuacUGCuaCGGGUgCugCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 81171 0.72 0.726003
Target:  5'- gGGuUGGCGAUGUCCACGcCGccgagcguguacGCCGGGc -3'
miRNA:   3'- aCU-ACUGCUACGGGUGCuGC------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 80795 0.71 0.787301
Target:  5'- cGGUGAUGGccgccCCCACGACGgaggccaccacguagGCCGGGa -3'
miRNA:   3'- aCUACUGCUac---GGGUGCUGC---------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 79762 0.67 0.920335
Target:  5'- ----cGCGGguccccgGUCCACGGCGGCCGGa -3'
miRNA:   3'- acuacUGCUa------CGGGUGCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 78683 0.67 0.914589
Target:  5'- ---gGACGG-GCuCUACGcCGGCCGGGg -3'
miRNA:   3'- acuaCUGCUaCG-GGUGCuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 77909 0.67 0.914589
Target:  5'- cGA-GACGcgGCCCACGGCcgugguggugaaGGgCGGGc -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCUG------------CUgGUCC- -5'
29506 5' -54.3 NC_006151.1 + 76991 0.67 0.927976
Target:  5'- cGGUGAgGAgcgccgcgagggugGCCCGCGAgcCGuggagcGCCAGGa -3'
miRNA:   3'- aCUACUgCUa-------------CGGGUGCU--GC------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 76830 0.66 0.961322
Target:  5'- ---aGugGcgGCCCGCGuccggGCGACguaCAGGa -3'
miRNA:   3'- acuaCugCuaCGGGUGC-----UGCUG---GUCC- -5'
29506 5' -54.3 NC_006151.1 + 75589 0.74 0.603913
Target:  5'- ---aGGCGGUcGCCgACGACGACgAGGu -3'
miRNA:   3'- acuaCUGCUA-CGGgUGCUGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 75319 0.74 0.624425
Target:  5'- gGGUGGCagagGGUGCCCAUGGCGugCucgaAGGu -3'
miRNA:   3'- aCUACUG----CUACGGGUGCUGCugG----UCC- -5'
29506 5' -54.3 NC_006151.1 + 74063 0.73 0.634694
Target:  5'- aGcAUGGCGuccgcGUCCACGGCGACgCAGGc -3'
miRNA:   3'- aC-UACUGCua---CGGGUGCUGCUG-GUCC- -5'
29506 5' -54.3 NC_006151.1 + 73978 0.69 0.837137
Target:  5'- -cGUGGCcAUGCCCGCGuccggcgccaccgaGGCCAGGa -3'
miRNA:   3'- acUACUGcUACGGGUGCug------------CUGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.