Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29506 | 5' | -54.3 | NC_006151.1 | + | 73183 | 0.68 | 0.902381 |
Target: 5'- cGAUGAacucgcacacCGAcugcUGCCCGCG--GGCCAGGc -3' miRNA: 3'- aCUACU----------GCU----ACGGGUGCugCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 69735 | 0.67 | 0.914589 |
Target: 5'- cGAUGugGccccccgcGgCCGCGACcGCCGGGg -3' miRNA: 3'- aCUACugCua------CgGGUGCUGcUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 69591 | 0.69 | 0.867819 |
Target: 5'- ---cGACGAgcucgGCCgCGCGGCGcACCAGc -3' miRNA: 3'- acuaCUGCUa----CGG-GUGCUGC-UGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 68303 | 0.7 | 0.810696 |
Target: 5'- ----nGCGcgcGCCCACGACGGCgAGGg -3' miRNA: 3'- acuacUGCua-CGGGUGCUGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 68267 | 0.77 | 0.428983 |
Target: 5'- cGgcGACGGUcgcggcgccggGCgCCACGGCGGCCAGGc -3' miRNA: 3'- aCuaCUGCUA-----------CG-GGUGCUGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 67292 | 0.68 | 0.895924 |
Target: 5'- cUGGUGccGCGAcGCgCGCGugGACCAc- -3' miRNA: 3'- -ACUAC--UGCUaCGgGUGCugCUGGUcc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 66797 | 0.72 | 0.716061 |
Target: 5'- cGgcGGCGggGCCCggggacgacgACGGCGACgAGGa -3' miRNA: 3'- aCuaCUGCuaCGGG----------UGCUGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 65791 | 0.66 | 0.9577 |
Target: 5'- cGAUGGCGccGCCCggcGCGgACGuGCCGcGGu -3' miRNA: 3'- aCUACUGCuaCGGG---UGC-UGC-UGGU-CC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 65607 | 0.67 | 0.914589 |
Target: 5'- cUGccGuACGAUccgGCCC-CGACGGCCAcGGg -3' miRNA: 3'- -ACuaC-UGCUA---CGGGuGCUGCUGGU-CC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 65284 | 0.7 | 0.827949 |
Target: 5'- aGAUGuuGccGCCCuuGACGuCCAGGu -3' miRNA: 3'- aCUACugCuaCGGGugCUGCuGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 64462 | 0.69 | 0.867819 |
Target: 5'- gGAUGGCGGcgcGCgCCGCcGCGGCgGGGa -3' miRNA: 3'- aCUACUGCUa--CG-GGUGcUGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 63484 | 0.67 | 0.925841 |
Target: 5'- cGgcGGCGgcGCCCGaagaaGGUGGCCAGGu -3' miRNA: 3'- aCuaCUGCuaCGGGUg----CUGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 62007 | 0.71 | 0.774301 |
Target: 5'- gGGUGACGugcgcgccGCCCugG-CGGCCAGc -3' miRNA: 3'- aCUACUGCua------CGGGugCuGCUGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 59138 | 0.66 | 0.945462 |
Target: 5'- gGGUGGC---GCCCGCGGgCGGguCCAGGc -3' miRNA: 3'- aCUACUGcuaCGGGUGCU-GCU--GGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 58498 | 0.72 | 0.735863 |
Target: 5'- ---gGAUGAUGCCCGCGcGCgGGCCGGc -3' miRNA: 3'- acuaCUGCUACGGGUGC-UG-CUGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 57583 | 0.68 | 0.908603 |
Target: 5'- --uUGACGuagGCgCACG-UGACCAGGc -3' miRNA: 3'- acuACUGCua-CGgGUGCuGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 57449 | 0.71 | 0.76486 |
Target: 5'- ---cGGCGGccCCCGCGuCGGCCAGGu -3' miRNA: 3'- acuaCUGCUacGGGUGCuGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 57204 | 0.66 | 0.953851 |
Target: 5'- cGA-GGCGAagGCCCGCu-CGACgAGGc -3' miRNA: 3'- aCUaCUGCUa-CGGGUGcuGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 56999 | 0.68 | 0.895924 |
Target: 5'- cGAaGAUGG-GCuCCAUGugGGCCAGa -3' miRNA: 3'- aCUaCUGCUaCG-GGUGCugCUGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 56082 | 0.66 | 0.9577 |
Target: 5'- cGA-GACGGUGUCCuGCGACGAguaCCGc- -3' miRNA: 3'- aCUaCUGCUACGGG-UGCUGCU---GGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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