miRNA display CGI


Results 81 - 100 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 55394 0.67 0.940915
Target:  5'- aGGUG-CGgcGCCUGCG-CGAgCAGGc -3'
miRNA:   3'- aCUACuGCuaCGGGUGCuGCUgGUCC- -5'
29506 5' -54.3 NC_006151.1 + 86866 0.67 0.940448
Target:  5'- ---cGGCGAcuacaucuucgUGCCCGCGGCGcaguacaACCAGc -3'
miRNA:   3'- acuaCUGCU-----------ACGGGUGCUGC-------UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 21040 0.67 0.938073
Target:  5'- cUGAaGAgGAcGCCCcCGACGcgcggggucagggcgGCCAGGg -3'
miRNA:   3'- -ACUaCUgCUaCGGGuGCUGC---------------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 142264 0.67 0.93613
Target:  5'- ---cGGCGAggagcGCCCcguccCGGCGGCCAGa -3'
miRNA:   3'- acuaCUGCUa----CGGGu----GCUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 52889 0.67 0.93613
Target:  5'- cGAaGGCGccGUGCgCACGAUgguguaGGCCGGGa -3'
miRNA:   3'- aCUaCUGC--UACGgGUGCUG------CUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 2496 0.67 0.93613
Target:  5'- cGAaGGCGgcGCCCGCGucaaaGuCCGGGu -3'
miRNA:   3'- aCUaCUGCuaCGGGUGCug---CuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 99588 0.67 0.93613
Target:  5'- aGGUGGCGGcgGCCgaGCGcCGcGCCGGGc -3'
miRNA:   3'- aCUACUGCUa-CGGg-UGCuGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 59138 0.66 0.945462
Target:  5'- gGGUGGC---GCCCGCGGgCGGguCCAGGc -3'
miRNA:   3'- aCUACUGcuaCGGGUGCU-GCU--GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 101711 0.66 0.945462
Target:  5'- aGcgGGCGGUGCCCuccgugcaccCGAUGGCCc-- -3'
miRNA:   3'- aCuaCUGCUACGGGu---------GCUGCUGGucc -5'
29506 5' -54.3 NC_006151.1 + 104639 0.66 0.945462
Target:  5'- aGGUGACGuacGUGCgCGCGGCcGCCGa- -3'
miRNA:   3'- aCUACUGC---UACGgGUGCUGcUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 36238 0.66 0.949773
Target:  5'- gGAgGACGA-GCCCGggucccCGGCcGCCGGGu -3'
miRNA:   3'- aCUaCUGCUaCGGGU------GCUGcUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 28790 0.66 0.949773
Target:  5'- cGG-GGCGGUccgGCCCGCGggacggGCGuCCGGGa -3'
miRNA:   3'- aCUaCUGCUA---CGGGUGC------UGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 10569 0.66 0.949773
Target:  5'- -aAUGGCGcgGCCgGCucGGCGGCCcGGc -3'
miRNA:   3'- acUACUGCuaCGGgUG--CUGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 36382 0.66 0.949773
Target:  5'- aGAgGcCGggGCCCcCGGCGGCCccGGGc -3'
miRNA:   3'- aCUaCuGCuaCGGGuGCUGCUGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 17022 0.66 0.949773
Target:  5'- gGGUGGCcggGAUcCCgGCGACGAucacguCCAGGg -3'
miRNA:   3'- aCUACUG---CUAcGGgUGCUGCU------GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 103470 0.66 0.949353
Target:  5'- cGGgcACGGUGCUCGCGGCGcuguggcGCCuGGu -3'
miRNA:   3'- aCUacUGCUACGGGUGCUGC-------UGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 44671 0.66 0.945462
Target:  5'- ---cGACacAUGCgCACGGCGGCCGGcGg -3'
miRNA:   3'- acuaCUGc-UACGgGUGCUGCUGGUC-C- -5'
29506 5' -54.3 NC_006151.1 + 31752 0.66 0.945462
Target:  5'- cGggGACGc-GCCUGCGGCGgcgggcgcgcGCCGGGc -3'
miRNA:   3'- aCuaCUGCuaCGGGUGCUGC----------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 28245 0.66 0.945462
Target:  5'- ---cGACGG-GCCCAU--UGGCCGGGg -3'
miRNA:   3'- acuaCUGCUaCGGGUGcuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 119316 0.66 0.945462
Target:  5'- ---cGGCcucgcaGCCCGCGACGGCCccGGGc -3'
miRNA:   3'- acuaCUGcua---CGGGUGCUGCUGG--UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.