Results 101 - 120 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29506 | 5' | -54.3 | NC_006151.1 | + | 110899 | 0.67 | 0.93059 |
Target: 5'- aGGUGcuugucguGCGcGUGCCgcagguuCACGAgGGCCAGGg -3' miRNA: 3'- aCUAC--------UGC-UACGG-------GUGCUgCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 76991 | 0.67 | 0.927976 |
Target: 5'- cGGUGAgGAgcgccgcgagggugGCCCGCGAgcCGuggagcGCCAGGa -3' miRNA: 3'- aCUACUgCUa-------------CGGGUGCU--GC------UGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 82141 | 0.67 | 0.925841 |
Target: 5'- cGcgGGCGG-GCCCgGCGGCu-CCAGGu -3' miRNA: 3'- aCuaCUGCUaCGGG-UGCUGcuGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 63484 | 0.67 | 0.925841 |
Target: 5'- cGgcGGCGgcGCCCGaagaaGGUGGCCAGGu -3' miRNA: 3'- aCuaCUGCuaCGGGUg----CUGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 128445 | 0.67 | 0.925841 |
Target: 5'- ---gGGCGucucgGCCCACGugGcGCCgAGGa -3' miRNA: 3'- acuaCUGCua---CGGGUGCugC-UGG-UCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 142264 | 0.67 | 0.93613 |
Target: 5'- ---cGGCGAggagcGCCCcguccCGGCGGCCAGa -3' miRNA: 3'- acuaCUGCUa----CGGGu----GCUGCUGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 21040 | 0.67 | 0.938073 |
Target: 5'- cUGAaGAgGAcGCCCcCGACGcgcggggucagggcgGCCAGGg -3' miRNA: 3'- -ACUaCUgCUaCGGGuGCUGC---------------UGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 103470 | 0.66 | 0.949353 |
Target: 5'- cGGgcACGGUGCUCGCGGCGcuguggcGCCuGGu -3' miRNA: 3'- aCUacUGCUACGGGUGCUGC-------UGGuCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 44671 | 0.66 | 0.945462 |
Target: 5'- ---cGACacAUGCgCACGGCGGCCGGcGg -3' miRNA: 3'- acuaCUGc-UACGgGUGCUGCUGGUC-C- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 31752 | 0.66 | 0.945462 |
Target: 5'- cGggGACGc-GCCUGCGGCGgcgggcgcgcGCCGGGc -3' miRNA: 3'- aCuaCUGCuaCGGGUGCUGC----------UGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 28245 | 0.66 | 0.945462 |
Target: 5'- ---cGACGG-GCCCAU--UGGCCGGGg -3' miRNA: 3'- acuaCUGCUaCGGGUGcuGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 119316 | 0.66 | 0.945462 |
Target: 5'- ---cGGCcucgcaGCCCGCGACGGCCccGGGc -3' miRNA: 3'- acuaCUGcua---CGGGUGCUGCUGG--UCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 104639 | 0.66 | 0.945462 |
Target: 5'- aGGUGACGuacGUGCgCGCGGCcGCCGa- -3' miRNA: 3'- aCUACUGC---UACGgGUGCUGcUGGUcc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 101711 | 0.66 | 0.945462 |
Target: 5'- aGcgGGCGGUGCCCuccgugcaccCGAUGGCCc-- -3' miRNA: 3'- aCuaCUGCUACGGGu---------GCUGCUGGucc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 59138 | 0.66 | 0.945462 |
Target: 5'- gGGUGGC---GCCCGCGGgCGGguCCAGGc -3' miRNA: 3'- aCUACUGcuaCGGGUGCU-GCU--GGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 91569 | 0.67 | 0.940915 |
Target: 5'- cGAUGGCGgcGCgCGCGugcuCCAGGu -3' miRNA: 3'- aCUACUGCuaCGgGUGCugcuGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 81509 | 0.67 | 0.940915 |
Target: 5'- cGAgaGCGcgGCCCGCGugagcucgGCGGCCGcGGc -3' miRNA: 3'- aCUacUGCuaCGGGUGC--------UGCUGGU-CC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 127386 | 0.67 | 0.940915 |
Target: 5'- gGGUGGCGggGgCCGCGGcCGAgucgaCGGGa -3' miRNA: 3'- aCUACUGCuaCgGGUGCU-GCUg----GUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 55394 | 0.67 | 0.940915 |
Target: 5'- aGGUG-CGgcGCCUGCG-CGAgCAGGc -3' miRNA: 3'- aCUACuGCuaCGGGUGCuGCUgGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 86866 | 0.67 | 0.940448 |
Target: 5'- ---cGGCGAcuacaucuucgUGCCCGCGGCGcaguacaACCAGc -3' miRNA: 3'- acuaCUGCU-----------ACGGGUGCUGC-------UGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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