Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29506 | 5' | -54.3 | NC_006151.1 | + | 4930 | 0.66 | 0.961322 |
Target: 5'- gGGUGAgcaGcgGCCCGuCGGuCGGCgGGGg -3' miRNA: 3'- aCUACUg--CuaCGGGU-GCU-GCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 21190 | 0.66 | 0.961322 |
Target: 5'- ---cGuCGGUGUCCGCGGgacCGcCCAGGa -3' miRNA: 3'- acuaCuGCUACGGGUGCU---GCuGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 21287 | 0.66 | 0.961322 |
Target: 5'- ----cGCGGUGCCCGugcCGACGAUCAc- -3' miRNA: 3'- acuacUGCUACGGGU---GCUGCUGGUcc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 98470 | 0.66 | 0.961322 |
Target: 5'- -uGUGGCGccUGCgCCACGACuggGACgAGGg -3' miRNA: 3'- acUACUGCu-ACG-GGUGCUG---CUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 133465 | 0.66 | 0.961322 |
Target: 5'- ---cGGuCGAgGCCCGCGagGCGGCCGcGGg -3' miRNA: 3'- acuaCU-GCUaCGGGUGC--UGCUGGU-CC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 55551 | 0.66 | 0.9577 |
Target: 5'- gGgcGACGAcGCCUACGugG-CCAa- -3' miRNA: 3'- aCuaCUGCUaCGGGUGCugCuGGUcc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 2730 | 0.66 | 0.9577 |
Target: 5'- cGcgGGCGAagcaggccggGCCCACGAUGgaGCUAGa -3' miRNA: 3'- aCuaCUGCUa---------CGGGUGCUGC--UGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 10569 | 0.66 | 0.949773 |
Target: 5'- -aAUGGCGcgGCCgGCucGGCGGCCcGGc -3' miRNA: 3'- acUACUGCuaCGGgUG--CUGCUGGuCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 28790 | 0.66 | 0.949773 |
Target: 5'- cGG-GGCGGUccgGCCCGCGggacggGCGuCCGGGa -3' miRNA: 3'- aCUaCUGCUA---CGGGUGC------UGCuGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 36238 | 0.66 | 0.949773 |
Target: 5'- gGAgGACGA-GCCCGggucccCGGCcGCCGGGu -3' miRNA: 3'- aCUaCUGCUaCGGGU------GCUGcUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 46518 | 0.66 | 0.949773 |
Target: 5'- gGAucUGACGGaggccuccgaGUCCGCgGACGACCAGa -3' miRNA: 3'- aCU--ACUGCUa---------CGGGUG-CUGCUGGUCc -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 81395 | 0.66 | 0.949773 |
Target: 5'- ----cGCGgcGCCCAgGuuGGCCAGGg -3' miRNA: 3'- acuacUGCuaCGGGUgCugCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 88771 | 0.66 | 0.949773 |
Target: 5'- uUGgcGACGGUcgcgcgcucGCCCuCGACGACgaCGGGc -3' miRNA: 3'- -ACuaCUGCUA---------CGGGuGCUGCUG--GUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 2591 | 0.66 | 0.953851 |
Target: 5'- cGcUGGCGGUagGCgCGCGGCGGCagCGGGa -3' miRNA: 3'- aCuACUGCUA--CGgGUGCUGCUG--GUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 10015 | 0.66 | 0.953851 |
Target: 5'- cGgcGGCGgcGgUCGCcGCGGCCAGGa -3' miRNA: 3'- aCuaCUGCuaCgGGUGcUGCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 21315 | 0.66 | 0.953851 |
Target: 5'- cGGUGGCGcgagacGCCCgGCG-CGGCgGGGg -3' miRNA: 3'- aCUACUGCua----CGGG-UGCuGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 57204 | 0.66 | 0.953851 |
Target: 5'- cGA-GGCGAagGCCCGCu-CGACgAGGc -3' miRNA: 3'- aCUaCUGCUa-CGGGUGcuGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 31954 | 0.66 | 0.955418 |
Target: 5'- gUGAUGACGccggggacgcgggacGUGCCCGCcgccugggaGcCGGCgAGGa -3' miRNA: 3'- -ACUACUGC---------------UACGGGUG---------CuGCUGgUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 45284 | 0.66 | 0.957325 |
Target: 5'- gGGUGAgcggcggucguccCGAgGaCCCGCGA-GGCCGGGa -3' miRNA: 3'- aCUACU-------------GCUaC-GGGUGCUgCUGGUCC- -5' |
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29506 | 5' | -54.3 | NC_006151.1 | + | 141422 | 0.66 | 0.957325 |
Target: 5'- gUGcgGGCGcgGCCCggcgcgaACGACGuCCccguAGGa -3' miRNA: 3'- -ACuaCUGCuaCGGG-------UGCUGCuGG----UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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