miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 10015 0.66 0.953851
Target:  5'- cGgcGGCGgcGgUCGCcGCGGCCAGGa -3'
miRNA:   3'- aCuaCUGCuaCgGGUGcUGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 21315 0.66 0.953851
Target:  5'- cGGUGGCGcgagacGCCCgGCG-CGGCgGGGg -3'
miRNA:   3'- aCUACUGCua----CGGG-UGCuGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 57204 0.66 0.953851
Target:  5'- cGA-GGCGAagGCCCGCu-CGACgAGGc -3'
miRNA:   3'- aCUaCUGCUa-CGGGUGcuGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 36382 0.66 0.949773
Target:  5'- aGAgGcCGggGCCCcCGGCGGCCccGGGc -3'
miRNA:   3'- aCUaCuGCuaCGGGuGCUGCUGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 10569 0.66 0.949773
Target:  5'- -aAUGGCGcgGCCgGCucGGCGGCCcGGc -3'
miRNA:   3'- acUACUGCuaCGGgUG--CUGCUGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 28790 0.66 0.949773
Target:  5'- cGG-GGCGGUccgGCCCGCGggacggGCGuCCGGGa -3'
miRNA:   3'- aCUaCUGCUA---CGGGUGC------UGCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 36238 0.66 0.949773
Target:  5'- gGAgGACGA-GCCCGggucccCGGCcGCCGGGu -3'
miRNA:   3'- aCUaCUGCUaCGGGU------GCUGcUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 46518 0.66 0.949773
Target:  5'- gGAucUGACGGaggccuccgaGUCCGCgGACGACCAGa -3'
miRNA:   3'- aCU--ACUGCUa---------CGGGUG-CUGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 81395 0.66 0.949773
Target:  5'- ----cGCGgcGCCCAgGuuGGCCAGGg -3'
miRNA:   3'- acuacUGCuaCGGGUgCugCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 88771 0.66 0.949773
Target:  5'- uUGgcGACGGUcgcgcgcucGCCCuCGACGACgaCGGGc -3'
miRNA:   3'- -ACuaCUGCUA---------CGGGuGCUGCUG--GUCC- -5'
29506 5' -54.3 NC_006151.1 + 17022 0.66 0.949773
Target:  5'- gGGUGGCcggGAUcCCgGCGACGAucacguCCAGGg -3'
miRNA:   3'- aCUACUG---CUAcGGgUGCUGCU------GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 103470 0.66 0.949353
Target:  5'- cGGgcACGGUGCUCGCGGCGcuguggcGCCuGGu -3'
miRNA:   3'- aCUacUGCUACGGGUGCUGC-------UGGuCC- -5'
29506 5' -54.3 NC_006151.1 + 44671 0.66 0.945462
Target:  5'- ---cGACacAUGCgCACGGCGGCCGGcGg -3'
miRNA:   3'- acuaCUGc-UACGgGUGCUGCUGGUC-C- -5'
29506 5' -54.3 NC_006151.1 + 31752 0.66 0.945462
Target:  5'- cGggGACGc-GCCUGCGGCGgcgggcgcgcGCCGGGc -3'
miRNA:   3'- aCuaCUGCuaCGGGUGCUGC----------UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 28245 0.66 0.945462
Target:  5'- ---cGACGG-GCCCAU--UGGCCGGGg -3'
miRNA:   3'- acuaCUGCUaCGGGUGcuGCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 119316 0.66 0.945462
Target:  5'- ---cGGCcucgcaGCCCGCGACGGCCccGGGc -3'
miRNA:   3'- acuaCUGcua---CGGGUGCUGCUGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 104639 0.66 0.945462
Target:  5'- aGGUGACGuacGUGCgCGCGGCcGCCGa- -3'
miRNA:   3'- aCUACUGC---UACGgGUGCUGcUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 101711 0.66 0.945462
Target:  5'- aGcgGGCGGUGCCCuccgugcaccCGAUGGCCc-- -3'
miRNA:   3'- aCuaCUGCUACGGGu---------GCUGCUGGucc -5'
29506 5' -54.3 NC_006151.1 + 59138 0.66 0.945462
Target:  5'- gGGUGGC---GCCCGCGGgCGGguCCAGGc -3'
miRNA:   3'- aCUACUGcuaCGGGUGCU-GCU--GGUCC- -5'
29506 5' -54.3 NC_006151.1 + 81509 0.67 0.940915
Target:  5'- cGAgaGCGcgGCCCGCGugagcucgGCGGCCGcGGc -3'
miRNA:   3'- aCUacUGCuaCGGGUGC--------UGCUGGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.