miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29507 3' -59.3 NC_006151.1 + 132803 0.67 0.686205
Target:  5'- gAGGCGCUGGUacagcgcguccggGCUGGCCgCcCGcgGGa -3'
miRNA:   3'- gUCCGCGGCCA-------------UGACCGG-GaGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 112481 0.67 0.667222
Target:  5'- gAGGCGCC-GUACacGGCCUUCGa--- -3'
miRNA:   3'- gUCCGCGGcCAUGa-CCGGGAGCaacu -5'
29507 3' -59.3 NC_006151.1 + 28811 0.68 0.657188
Target:  5'- aCGGGCGuCCGGgaccggccaaUGCgGGCCC-CGggGAc -3'
miRNA:   3'- -GUCCGC-GGCC----------AUGaCCGGGaGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 23904 0.68 0.646128
Target:  5'- uGGGCGUCGGUcGCgGGCCCgacgggccgccggUCGUcgUGGa -3'
miRNA:   3'- gUCCGCGGCCA-UGaCCGGG-------------AGCA--ACU- -5'
29507 3' -59.3 NC_006151.1 + 39460 0.68 0.626999
Target:  5'- cCAGuGCGCCGuGcGCUGGCCCggGUg-- -3'
miRNA:   3'- -GUC-CGCGGC-CaUGACCGGGagCAacu -5'
29507 3' -59.3 NC_006151.1 + 129235 0.68 0.616933
Target:  5'- -uGGCGCgGGUGCgc-CCCUCGgUGAc -3'
miRNA:   3'- guCCGCGgCCAUGaccGGGAGCaACU- -5'
29507 3' -59.3 NC_006151.1 + 5639 0.68 0.606879
Target:  5'- cCGGGCGCCGaG-ACcGGCCCggcggCGggGGa -3'
miRNA:   3'- -GUCCGCGGC-CaUGaCCGGGa----GCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 19355 0.69 0.596843
Target:  5'- gAGGCGUCGugcagcguGUAgaGGCCCgugUCGUUGGg -3'
miRNA:   3'- gUCCGCGGC--------CAUgaCCGGG---AGCAACU- -5'
29507 3' -59.3 NC_006151.1 + 74325 0.69 0.596843
Target:  5'- gCGGGUGCaGGgGCUGGUUCUCGUUc- -3'
miRNA:   3'- -GUCCGCGgCCaUGACCGGGAGCAAcu -5'
29507 3' -59.3 NC_006151.1 + 122598 0.69 0.596843
Target:  5'- -uGGCGUccacgaaccaggCGGUGCgGGCCCUCGa--- -3'
miRNA:   3'- guCCGCG------------GCCAUGaCCGGGAGCaacu -5'
29507 3' -59.3 NC_006151.1 + 46723 0.69 0.596843
Target:  5'- uCGGGgGCCGGgGCcGGCCCggggUCGgcGAa -3'
miRNA:   3'- -GUCCgCGGCCaUGaCCGGG----AGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 52469 0.69 0.547169
Target:  5'- cCAGGCGCCGGUA--GGCCgC-CG-UGAc -3'
miRNA:   3'- -GUCCGCGGCCAUgaCCGG-GaGCaACU- -5'
29507 3' -59.3 NC_006151.1 + 126148 0.69 0.547169
Target:  5'- uCGGGCuGCUGGUGCUGGCcggCCUgGUc-- -3'
miRNA:   3'- -GUCCG-CGGCCAUGACCG---GGAgCAacu -5'
29507 3' -59.3 NC_006151.1 + 21546 0.7 0.527649
Target:  5'- -cGGgGCCGGggcCUGGgCCUCGgcGAg -3'
miRNA:   3'- guCCgCGGCCau-GACCgGGAGCaaCU- -5'
29507 3' -59.3 NC_006151.1 + 86249 0.7 0.517985
Target:  5'- -cGGCGCC-GUGCUGGCCgUgGUcGAc -3'
miRNA:   3'- guCCGCGGcCAUGACCGGgAgCAaCU- -5'
29507 3' -59.3 NC_006151.1 + 129144 0.71 0.470825
Target:  5'- aAGaGCGCCGGcgcacACUGGCUCUCGg--- -3'
miRNA:   3'- gUC-CGCGGCCa----UGACCGGGAGCaacu -5'
29507 3' -59.3 NC_006151.1 + 3485 0.71 0.461654
Target:  5'- gCGGGCGCCGGaGCcGGUcguCCUCGgagGAg -3'
miRNA:   3'- -GUCCGCGGCCaUGaCCG---GGAGCaa-CU- -5'
29507 3' -59.3 NC_006151.1 + 54989 0.72 0.391934
Target:  5'- -cGGCGCCGGUGaaGGUgCUCGUcGGg -3'
miRNA:   3'- guCCGCGGCCAUgaCCGgGAGCAaCU- -5'
29507 3' -59.3 NC_006151.1 + 100090 0.73 0.383712
Target:  5'- gAGGCGCCGGcgccgGCgccGCCCUCGcUGGc -3'
miRNA:   3'- gUCCGCGGCCa----UGac-CGGGAGCaACU- -5'
29507 3' -59.3 NC_006151.1 + 132692 0.73 0.35974
Target:  5'- cCAGGCG-CGcGUACaGGUCCUCGUUGc -3'
miRNA:   3'- -GUCCGCgGC-CAUGaCCGGGAGCAACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.