Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29507 | 5' | -60.2 | NC_006151.1 | + | 54303 | 0.66 | 0.683345 |
Target: 5'- aGGCCGCCGUGcGGCAGaUCCAGUcCa- -3' miRNA: 3'- -UCGGUGGUAC-UCGUCgGGGUCGaGca -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 50779 | 0.66 | 0.683345 |
Target: 5'- cGGCCGCCccGAc--GCCCCAGCUgcCGa -3' miRNA: 3'- -UCGGUGGuaCUcguCGGGGUCGA--GCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 127877 | 0.66 | 0.683345 |
Target: 5'- cGCCGCCGUc--CAcCUCCAGCUCGUc -3' miRNA: 3'- uCGGUGGUAcucGUcGGGGUCGAGCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 120202 | 0.66 | 0.683345 |
Target: 5'- -cCCACCAaGGGCAGCgcggagccCCCGGCgcgCGa -3' miRNA: 3'- ucGGUGGUaCUCGUCG--------GGGUCGa--GCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 28276 | 0.67 | 0.612398 |
Target: 5'- gGGCC-CCGggGAcGCGGgCCCGGCUCc- -3' miRNA: 3'- -UCGGuGGUa-CU-CGUCgGGGUCGAGca -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 86096 | 0.67 | 0.612398 |
Target: 5'- cGCCGCCAUGG--GGCCCguGUaCGUg -3' miRNA: 3'- uCGGUGGUACUcgUCGGGguCGaGCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 80965 | 0.67 | 0.612398 |
Target: 5'- cGCCgGCCAUGAGCuGCUCCuccauguccuuGGaCUCGa -3' miRNA: 3'- uCGG-UGGUACUCGuCGGGG-----------UC-GAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 119743 | 0.67 | 0.60226 |
Target: 5'- cGCCGCCGUGGacCGGCUCUGGCggaCGUg -3' miRNA: 3'- uCGGUGGUACUc-GUCGGGGUCGa--GCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 17316 | 0.67 | 0.60226 |
Target: 5'- cGuCCGCCGggGGGCGccGCgUCAGCUCGUg -3' miRNA: 3'- uC-GGUGGUa-CUCGU--CGgGGUCGAGCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 5876 | 0.67 | 0.592143 |
Target: 5'- gGGCCGCC---GGgGGCCCCGGcCUCu- -3' miRNA: 3'- -UCGGUGGuacUCgUCGGGGUC-GAGca -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 116421 | 0.67 | 0.582055 |
Target: 5'- gAGCUugUAgcucGGCAGCUUCAGCUUGUc -3' miRNA: 3'- -UCGGugGUac--UCGUCGGGGUCGAGCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 28836 | 0.67 | 0.612398 |
Target: 5'- gGGCC-CCGggGAcGCGGgCCCGGCUCc- -3' miRNA: 3'- -UCGGuGGUa-CU-CGUCgGGGUCGAGca -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 123915 | 0.67 | 0.612398 |
Target: 5'- cGGCgGCCGUGAcGCGggccGCCUCGGcCUCGc -3' miRNA: 3'- -UCGgUGGUACU-CGU----CGGGGUC-GAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 140204 | 0.67 | 0.616458 |
Target: 5'- uGGCCACCGcggGGGCGGUgcugcagaaccugcgCCUgaAGCUCGg -3' miRNA: 3'- -UCGGUGGUa--CUCGUCG---------------GGG--UCGAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 110148 | 0.67 | 0.622551 |
Target: 5'- cGCCACCGgacucgGGGCccuGGCCCU-GCUCa- -3' miRNA: 3'- uCGGUGGUa-----CUCG---UCGGGGuCGAGca -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 132597 | 0.67 | 0.622551 |
Target: 5'- gGGCUccGCCccGGGCAcCCCCAGgUCGa -3' miRNA: 3'- -UCGG--UGGuaCUCGUcGGGGUCgAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 89562 | 0.67 | 0.622551 |
Target: 5'- aGGCCGCgAggcugaUGGGCAcGCCCaugGGCUCGc -3' miRNA: 3'- -UCGGUGgU------ACUCGU-CGGGg--UCGAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 95154 | 0.67 | 0.632711 |
Target: 5'- cGGCCAuguCCAUGucCAGCgCCAGCacggUCGUg -3' miRNA: 3'- -UCGGU---GGUACucGUCGgGGUCG----AGCA- -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 36168 | 0.67 | 0.632711 |
Target: 5'- cGGcCCAgCAgcaGcAGCAGCCCCgccggGGCUCGg -3' miRNA: 3'- -UC-GGUgGUa--C-UCGUCGGGG-----UCGAGCa -5' |
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29507 | 5' | -60.2 | NC_006151.1 | + | 46842 | 0.67 | 0.582055 |
Target: 5'- cGCCGCCccccgGGGCGGgCCUccggcgucuAGCUCGUc -3' miRNA: 3'- uCGGUGGua---CUCGUCgGGG---------UCGAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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