miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29507 5' -60.2 NC_006151.1 + 110833 0.73 0.309647
Target:  5'- aGGCCgACCGUGGGcCGGgCCCAGCUgcUGUa -3'
miRNA:   3'- -UCGG-UGGUACUC-GUCgGGGUCGA--GCA- -5'
29507 5' -60.2 NC_006151.1 + 110148 0.67 0.622551
Target:  5'- cGCCACCGgacucgGGGCccuGGCCCU-GCUCa- -3'
miRNA:   3'- uCGGUGGUa-----CUCG---UCGGGGuCGAGca -5'
29507 5' -60.2 NC_006151.1 + 109931 0.76 0.201792
Target:  5'- cGCCGCCGgccucuccccUGGGCGGCCUCGGCcgCGUc -3'
miRNA:   3'- uCGGUGGU----------ACUCGUCGGGGUCGa-GCA- -5'
29507 5' -60.2 NC_006151.1 + 107720 0.66 0.683345
Target:  5'- aGGCCGCCGcGgcccccaagcAGCAGCCCCgggAGCcCGc -3'
miRNA:   3'- -UCGGUGGUaC----------UCGUCGGGG---UCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 103922 0.72 0.316775
Target:  5'- cGGCCGCCGUgGAGgAGCCgCAGCUg-- -3'
miRNA:   3'- -UCGGUGGUA-CUCgUCGGgGUCGAgca -5'
29507 5' -60.2 NC_006151.1 + 103817 0.66 0.693381
Target:  5'- cGGCgGCCGUGgcGGCGGCCgUggagauGCUCGg -3'
miRNA:   3'- -UCGgUGGUAC--UCGUCGGgGu-----CGAGCa -5'
29507 5' -60.2 NC_006151.1 + 102924 0.66 0.663158
Target:  5'- cGGCCGCCGagGAGCGGCUgCGcgcGCUgGa -3'
miRNA:   3'- -UCGGUGGUa-CUCGUCGGgGU---CGAgCa -5'
29507 5' -60.2 NC_006151.1 + 102032 0.69 0.493579
Target:  5'- cGCCGuCCGggagcugGAGCuGGCCCC-GCUCGa -3'
miRNA:   3'- uCGGU-GGUa------CUCG-UCGGGGuCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 96213 0.69 0.512777
Target:  5'- cGUCGCCGUGgcGGCGGCCgCGGCgaggCGc -3'
miRNA:   3'- uCGGUGGUAC--UCGUCGGgGUCGa---GCa -5'
29507 5' -60.2 NC_006151.1 + 95154 0.67 0.632711
Target:  5'- cGGCCAuguCCAUGucCAGCgCCAGCacggUCGUg -3'
miRNA:   3'- -UCGGU---GGUACucGUCGgGGUCG----AGCA- -5'
29507 5' -60.2 NC_006151.1 + 94607 0.66 0.673268
Target:  5'- cGCgCACaugucgAUGAGCAGCUCCuGgUCGUa -3'
miRNA:   3'- uCG-GUGg-----UACUCGUCGGGGuCgAGCA- -5'
29507 5' -60.2 NC_006151.1 + 89652 0.68 0.542122
Target:  5'- cGGCCACCGaGAgGUGGCgCguGCUCGg -3'
miRNA:   3'- -UCGGUGGUaCU-CGUCGgGguCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 89562 0.67 0.622551
Target:  5'- aGGCCGCgAggcugaUGGGCAcGCCCaugGGCUCGc -3'
miRNA:   3'- -UCGGUGgU------ACUCGU-CGGGg--UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 87448 0.66 0.683345
Target:  5'- cGCCGCCGc-GGCcGCCCCcGCUCc- -3'
miRNA:   3'- uCGGUGGUacUCGuCGGGGuCGAGca -5'
29507 5' -60.2 NC_006151.1 + 87100 0.68 0.561992
Target:  5'- cGCCGCCGUGGucucGUcGCUCCAGCgCGa -3'
miRNA:   3'- uCGGUGGUACU----CGuCGGGGUCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 86964 0.69 0.465424
Target:  5'- cGGCCGCCAUGGaccGCcGCCaCCGccGCUCGc -3'
miRNA:   3'- -UCGGUGGUACU---CGuCGG-GGU--CGAGCa -5'
29507 5' -60.2 NC_006151.1 + 86928 0.66 0.683345
Target:  5'- cGCCcaGCCu---GgAGUCCCAGCUCGg -3'
miRNA:   3'- uCGG--UGGuacuCgUCGGGGUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 86833 0.7 0.420445
Target:  5'- uGCgGCCAUG-GCAGCCCC-GC-CGa -3'
miRNA:   3'- uCGgUGGUACuCGUCGGGGuCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 86548 0.71 0.370094
Target:  5'- aGGCCGCCGUGgcgccguuccGGCAGCuCUCGGCgCGg -3'
miRNA:   3'- -UCGGUGGUAC----------UCGUCG-GGGUCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 86096 0.67 0.612398
Target:  5'- cGCCGCCAUGG--GGCCCguGUaCGUg -3'
miRNA:   3'- uCGGUGGUACUcgUCGGGguCGaGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.