miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29507 5' -60.2 NC_006151.1 + 102924 0.66 0.663158
Target:  5'- cGGCCGCCGagGAGCGGCUgCGcgcGCUgGa -3'
miRNA:   3'- -UCGGUGGUa-CUCGUCGGgGU---CGAgCa -5'
29507 5' -60.2 NC_006151.1 + 50719 0.66 0.652008
Target:  5'- cGGCCGCCccGgcgguccAGCuGCCCCGGCccCGg -3'
miRNA:   3'- -UCGGUGGuaC-------UCGuCGGGGUCGa-GCa -5'
29507 5' -60.2 NC_006151.1 + 139931 0.66 0.642871
Target:  5'- cGUCGCCGUGGGCcgccGUCCUcgAGUUCGg -3'
miRNA:   3'- uCGGUGGUACUCGu---CGGGG--UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 51432 0.66 0.642871
Target:  5'- cGUgGCCAUGAcGCGGaCgCCGcGCUCGUa -3'
miRNA:   3'- uCGgUGGUACU-CGUC-GgGGU-CGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 52452 0.67 0.632711
Target:  5'- cGCCGCCGUGAcgGCGGCCa-GGCgcCGg -3'
miRNA:   3'- uCGGUGGUACU--CGUCGGggUCGa-GCa -5'
29507 5' -60.2 NC_006151.1 + 36168 0.67 0.632711
Target:  5'- cGGcCCAgCAgcaGcAGCAGCCCCgccggGGCUCGg -3'
miRNA:   3'- -UC-GGUgGUa--C-UCGUCGGGG-----UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 95154 0.67 0.632711
Target:  5'- cGGCCAuguCCAUGucCAGCgCCAGCacggUCGUg -3'
miRNA:   3'- -UCGGU---GGUACucGUCGgGGUCG----AGCA- -5'
29507 5' -60.2 NC_006151.1 + 110148 0.67 0.622551
Target:  5'- cGCCACCGgacucgGGGCccuGGCCCU-GCUCa- -3'
miRNA:   3'- uCGGUGGUa-----CUCG---UCGGGGuCGAGca -5'
29507 5' -60.2 NC_006151.1 + 132597 0.67 0.622551
Target:  5'- gGGCUccGCCccGGGCAcCCCCAGgUCGa -3'
miRNA:   3'- -UCGG--UGGuaCUCGUcGGGGUCgAGCa -5'
29507 5' -60.2 NC_006151.1 + 89562 0.67 0.622551
Target:  5'- aGGCCGCgAggcugaUGGGCAcGCCCaugGGCUCGc -3'
miRNA:   3'- -UCGGUGgU------ACUCGU-CGGGg--UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 140204 0.67 0.616458
Target:  5'- uGGCCACCGcggGGGCGGUgcugcagaaccugcgCCUgaAGCUCGg -3'
miRNA:   3'- -UCGGUGGUa--CUCGUCG---------------GGG--UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 80965 0.67 0.612398
Target:  5'- cGCCgGCCAUGAGCuGCUCCuccauguccuuGGaCUCGa -3'
miRNA:   3'- uCGG-UGGUACUCGuCGGGG-----------UC-GAGCa -5'
29507 5' -60.2 NC_006151.1 + 86096 0.67 0.612398
Target:  5'- cGCCGCCAUGG--GGCCCguGUaCGUg -3'
miRNA:   3'- uCGGUGGUACUcgUCGGGguCGaGCA- -5'
29507 5' -60.2 NC_006151.1 + 28276 0.67 0.612398
Target:  5'- gGGCC-CCGggGAcGCGGgCCCGGCUCc- -3'
miRNA:   3'- -UCGGuGGUa-CU-CGUCgGGGUCGAGca -5'
29507 5' -60.2 NC_006151.1 + 28836 0.67 0.612398
Target:  5'- gGGCC-CCGggGAcGCGGgCCCGGCUCc- -3'
miRNA:   3'- -UCGGuGGUa-CU-CGUCgGGGUCGAGca -5'
29507 5' -60.2 NC_006151.1 + 123915 0.67 0.612398
Target:  5'- cGGCgGCCGUGAcGCGggccGCCUCGGcCUCGc -3'
miRNA:   3'- -UCGgUGGUACU-CGU----CGGGGUC-GAGCa -5'
29507 5' -60.2 NC_006151.1 + 119743 0.67 0.60226
Target:  5'- cGCCGCCGUGGacCGGCUCUGGCggaCGUg -3'
miRNA:   3'- uCGGUGGUACUc-GUCGGGGUCGa--GCA- -5'
29507 5' -60.2 NC_006151.1 + 17316 0.67 0.60226
Target:  5'- cGuCCGCCGggGGGCGccGCgUCAGCUCGUg -3'
miRNA:   3'- uC-GGUGGUa-CUCGU--CGgGGUCGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 5876 0.67 0.592143
Target:  5'- gGGCCGCC---GGgGGCCCCGGcCUCu- -3'
miRNA:   3'- -UCGGUGGuacUCgUCGGGGUC-GAGca -5'
29507 5' -60.2 NC_006151.1 + 46842 0.67 0.582055
Target:  5'- cGCCGCCccccgGGGCGGgCCUccggcgucuAGCUCGUc -3'
miRNA:   3'- uCGGUGGua---CUCGUCgGGG---------UCGAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.