miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29508 3' -59.4 NC_006151.1 + 21210 1.12 0.000969
Target:  5'- cCCAGGAGGCGAUACCCCUUCGCCCCCc -3'
miRNA:   3'- -GGUCCUCCGCUAUGGGGAAGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 60567 0.79 0.161577
Target:  5'- cCCAGGAGGcCGAagaagcugucCCCCgcCGCCCCCg -3'
miRNA:   3'- -GGUCCUCC-GCUau--------GGGGaaGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 137608 0.78 0.201186
Target:  5'- aUCGGGGGcGCGGgcggggACCCCggCGCCUCCg -3'
miRNA:   3'- -GGUCCUC-CGCUa-----UGGGGaaGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 8359 0.78 0.206074
Target:  5'- aCGcGGAGGCGcgagGCCCC--CGCCCCCg -3'
miRNA:   3'- gGU-CCUCCGCua--UGGGGaaGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 1396 0.76 0.27306
Target:  5'- uCCAGGAGGagg-ACCCCcgUCaCCCCCa -3'
miRNA:   3'- -GGUCCUCCgcuaUGGGGa-AGcGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 139746 0.75 0.286439
Target:  5'- aCAGGAGGCGGaucguccggacggcgGgCCCgacgCGCCCCCc -3'
miRNA:   3'- gGUCCUCCGCUa--------------UgGGGaa--GCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 63754 0.75 0.305757
Target:  5'- gUCGGcGGGGCGu--CCUCggCGCCCCCg -3'
miRNA:   3'- -GGUC-CUCCGCuauGGGGaaGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 109105 0.75 0.305757
Target:  5'- cCCAGuGAGGCGAgccgccgGCCCg--CGCCCgCCg -3'
miRNA:   3'- -GGUC-CUCCGCUa------UGGGgaaGCGGG-GG- -5'
29508 3' -59.4 NC_006151.1 + 65749 0.75 0.312645
Target:  5'- gCCGGGAGGCcucguCCCCguccccgUCGCCgCCg -3'
miRNA:   3'- -GGUCCUCCGcuau-GGGGa------AGCGGgGG- -5'
29508 3' -59.4 NC_006151.1 + 17190 0.74 0.326057
Target:  5'- aCAGGuggaucgGGGCcGUGCCCCgg-GCCCCCg -3'
miRNA:   3'- gGUCC-------UCCGcUAUGGGGaagCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 138833 0.74 0.334014
Target:  5'- gCCAGGAgcGGCGcauguuugGCCCCUUCcGCgaCCCCg -3'
miRNA:   3'- -GGUCCU--CCGCua------UGGGGAAG-CG--GGGG- -5'
29508 3' -59.4 NC_006151.1 + 43853 0.74 0.341371
Target:  5'- gUAGGcGGGuCGGUACgcaCCCUgccUCGCCCCCg -3'
miRNA:   3'- gGUCC-UCC-GCUAUG---GGGA---AGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 33892 0.74 0.356433
Target:  5'- cCCcGGGGGCGGggGCCUCg-CGCCUCCg -3'
miRNA:   3'- -GGuCCUCCGCUa-UGGGGaaGCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 34038 0.74 0.364137
Target:  5'- gCCGGGaAGGgGAcccgGCCCuCUUCGUCuCCCg -3'
miRNA:   3'- -GGUCC-UCCgCUa---UGGG-GAAGCGG-GGG- -5'
29508 3' -59.4 NC_006151.1 + 48764 0.73 0.387933
Target:  5'- gCCAcGGGGGcCGAcGCCuCCgcccCGCCCCCc -3'
miRNA:   3'- -GGU-CCUCC-GCUaUGG-GGaa--GCGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 135977 0.73 0.396089
Target:  5'- gCCAuGGAcgaGGCG--GCCaCCUUCGCCCuCCa -3'
miRNA:   3'- -GGU-CCU---CCGCuaUGG-GGAAGCGGG-GG- -5'
29508 3' -59.4 NC_006151.1 + 124599 0.73 0.404355
Target:  5'- --uGGAGGCGcgcuccguGUACCCCUacgacuccuUCGCCCUg -3'
miRNA:   3'- gguCCUCCGC--------UAUGGGGA---------AGCGGGGg -5'
29508 3' -59.4 NC_006151.1 + 50373 0.73 0.404355
Target:  5'- gCCGgcGGGGGCGAgacgcggGCCCCgcggUCcucgcgcgGCCCCCc -3'
miRNA:   3'- -GGU--CCUCCGCUa------UGGGGa---AG--------CGGGGG- -5'
29508 3' -59.4 NC_006151.1 + 130967 0.73 0.412728
Target:  5'- gCGGGGGcCGGUACCCCg--GCCgCCCg -3'
miRNA:   3'- gGUCCUCcGCUAUGGGGaagCGG-GGG- -5'
29508 3' -59.4 NC_006151.1 + 42268 0.72 0.421208
Target:  5'- gCGGGGGGUGGgaucgcgaGCCUC-UCGCCCCg -3'
miRNA:   3'- gGUCCUCCGCUa-------UGGGGaAGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.