miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29508 5' -52.7 NC_006151.1 + 81928 0.66 0.96958
Target:  5'- gGAGAAGAcGaaggcggccacgccgAGGCGCAC-CGCCgCGCg -3'
miRNA:   3'- -UUCUUCUaCa--------------UCUGCGUGuGCGG-GUG- -5'
29508 5' -52.7 NC_006151.1 + 118361 0.66 0.969271
Target:  5'- ------cUGcgAGGCgGCGCGCGCCCGCu -3'
miRNA:   3'- uucuucuACa-UCUG-CGUGUGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 112215 0.66 0.969271
Target:  5'- -------cGUGGGCGCAguCGCGCUCGCu -3'
miRNA:   3'- uucuucuaCAUCUGCGU--GUGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 95043 0.66 0.969271
Target:  5'- -cGAAGccGUcgaagGGGCGCAggcCGCGCUCGCa -3'
miRNA:   3'- uuCUUCuaCA-----UCUGCGU---GUGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 23040 0.66 0.969271
Target:  5'- gAAGAAGcgGgcGGC-CGCGgcgaGCCCACg -3'
miRNA:   3'- -UUCUUCuaCauCUGcGUGUg---CGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 14518 0.66 0.969271
Target:  5'- aGGGggGggGUcGugGCuCACGCUgACg -3'
miRNA:   3'- -UUCuuCuaCAuCugCGuGUGCGGgUG- -5'
29508 5' -52.7 NC_006151.1 + 35079 0.66 0.968644
Target:  5'- -cGggGGUGggucgcgugccgAGcAUGCGCcucGCGCCCGCg -3'
miRNA:   3'- uuCuuCUACa-----------UC-UGCGUG---UGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 60208 0.66 0.966049
Target:  5'- -uGAAGAUGggcucGcCGCGCGCGCCgGa -3'
miRNA:   3'- uuCUUCUACau---CuGCGUGUGCGGgUg -5'
29508 5' -52.7 NC_006151.1 + 70208 0.66 0.966049
Target:  5'- -uGgcGAUGUGGGCGUccaucgcgGCGcCGCUCACc -3'
miRNA:   3'- uuCuuCUACAUCUGCG--------UGU-GCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 90048 0.66 0.966049
Target:  5'- cAGGgcGAUGccgAGGCGCgccucggugcGCACGUUCACg -3'
miRNA:   3'- -UUCuuCUACa--UCUGCG----------UGUGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 22276 0.66 0.966049
Target:  5'- cGGGggGAagGUcGGCGCGggcacggcgucCACGUCCGCg -3'
miRNA:   3'- -UUCuuCUa-CAuCUGCGU-----------GUGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 20889 0.66 0.962596
Target:  5'- -uGggGucg-AGGCGCagcagcuccACGCGCCCGCu -3'
miRNA:   3'- uuCuuCuacaUCUGCG---------UGUGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 72458 0.66 0.962596
Target:  5'- cGGggGAcagcGUAGGCaGCGCaAUGUCCACc -3'
miRNA:   3'- uUCuuCUa---CAUCUG-CGUG-UGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 73785 0.66 0.962596
Target:  5'- ---uGGgcGgcGGCGCGCaccucgGCGCCCACg -3'
miRNA:   3'- uucuUCuaCauCUGCGUG------UGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 133203 0.66 0.962596
Target:  5'- cAGAAGAUGcgcuuguugaAGGCGUGCGuCGCgCCGCg -3'
miRNA:   3'- uUCUUCUACa---------UCUGCGUGU-GCG-GGUG- -5'
29508 5' -52.7 NC_006151.1 + 49120 0.66 0.962596
Target:  5'- cGGgcGAcGUAcccGACGCugccCGCGCCCGCc -3'
miRNA:   3'- uUCuuCUaCAU---CUGCGu---GUGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 60527 0.66 0.958907
Target:  5'- cGAGAAGAcgcagacguUGUcccccgcggcGAgGCGCGCGCCCAg -3'
miRNA:   3'- -UUCUUCU---------ACAu---------CUgCGUGUGCGGGUg -5'
29508 5' -52.7 NC_006151.1 + 75605 0.66 0.958907
Target:  5'- -cGAcGAgGUcGGCGCGCACGCgCGCc -3'
miRNA:   3'- uuCUuCUaCAuCUGCGUGUGCGgGUG- -5'
29508 5' -52.7 NC_006151.1 + 56589 0.66 0.958907
Target:  5'- cGGGcuGGUGcGGACGCgccccggcgGCGCGCUCACc -3'
miRNA:   3'- -UUCuuCUACaUCUGCG---------UGUGCGGGUG- -5'
29508 5' -52.7 NC_006151.1 + 54998 0.66 0.958907
Target:  5'- -uGAAGGUGcucgucGGGCGCAa--GCCCGCc -3'
miRNA:   3'- uuCUUCUACa-----UCUGCGUgugCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.