miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29509 3' -55.2 NC_006151.1 + 131905 0.66 0.931245
Target:  5'- gGCGACGggGGCGgcagCAGgGCCuccgCGg -3'
miRNA:   3'- gUGCUGCgaCCGCaa--GUCgUGGua--GC- -5'
29509 3' -55.2 NC_006151.1 + 98816 0.66 0.931245
Target:  5'- cCGCuGGCGUUGGCGgu--GCGCCAg-- -3'
miRNA:   3'- -GUG-CUGCGACCGCaaguCGUGGUagc -5'
29509 3' -55.2 NC_006151.1 + 27088 0.66 0.931245
Target:  5'- gCGCGGCGCagGGCGcgCGugucGC-CCGUCa -3'
miRNA:   3'- -GUGCUGCGa-CCGCaaGU----CGuGGUAGc -5'
29509 3' -55.2 NC_006151.1 + 107464 0.66 0.929686
Target:  5'- gGCGACGacCUGGUGgcCAGCGcgcugccgcugcccCCGUCGc -3'
miRNA:   3'- gUGCUGC--GACCGCaaGUCGU--------------GGUAGC- -5'
29509 3' -55.2 NC_006151.1 + 19445 0.66 0.925963
Target:  5'- gGCGgcucGCGCUGGagccgCGGCACC-UCGg -3'
miRNA:   3'- gUGC----UGCGACCgcaa-GUCGUGGuAGC- -5'
29509 3' -55.2 NC_006151.1 + 104810 0.66 0.925963
Target:  5'- cCGCGAC-CUGGCGg-CGGCGCgCGaCGg -3'
miRNA:   3'- -GUGCUGcGACCGCaaGUCGUG-GUaGC- -5'
29509 3' -55.2 NC_006151.1 + 57857 0.66 0.925963
Target:  5'- cCACGGCGCUGGuCGcgcgccccgcCGGCAgaCGUCGc -3'
miRNA:   3'- -GUGCUGCGACC-GCaa--------GUCGUg-GUAGC- -5'
29509 3' -55.2 NC_006151.1 + 68276 0.66 0.925963
Target:  5'- uCGCGGCGCcgGGCGccaCGGCgGCCAggCGc -3'
miRNA:   3'- -GUGCUGCGa-CCGCaa-GUCG-UGGUa-GC- -5'
29509 3' -55.2 NC_006151.1 + 86924 0.66 0.925963
Target:  5'- -cCGGCGCccagccUGGaGUcccagcUCGGCGCCAUCGu -3'
miRNA:   3'- guGCUGCG------ACCgCA------AGUCGUGGUAGC- -5'
29509 3' -55.2 NC_006151.1 + 100663 0.66 0.920438
Target:  5'- gACGAgCGC-GGCGUgcuGGCGCuCGUCGc -3'
miRNA:   3'- gUGCU-GCGaCCGCAag-UCGUG-GUAGC- -5'
29509 3' -55.2 NC_006151.1 + 26850 0.66 0.920438
Target:  5'- aCGCGACGgUGGUGUccgagcCGGCGUCGUCc -3'
miRNA:   3'- -GUGCUGCgACCGCAa-----GUCGUGGUAGc -5'
29509 3' -55.2 NC_006151.1 + 75827 0.66 0.920438
Target:  5'- gGCGcACGCcGGcCGUggucaCAGCACCccGUCGa -3'
miRNA:   3'- gUGC-UGCGaCC-GCAa----GUCGUGG--UAGC- -5'
29509 3' -55.2 NC_006151.1 + 132156 0.66 0.920438
Target:  5'- gACGGCGCgcagcUGcGCGgcCGGCACCggCGc -3'
miRNA:   3'- gUGCUGCG-----AC-CGCaaGUCGUGGuaGC- -5'
29509 3' -55.2 NC_006151.1 + 128616 0.66 0.920438
Target:  5'- cCGCGGCGUgcgccccaggUGGCGgacCAcGCGCgCGUCGa -3'
miRNA:   3'- -GUGCUGCG----------ACCGCaa-GU-CGUG-GUAGC- -5'
29509 3' -55.2 NC_006151.1 + 66301 0.66 0.919873
Target:  5'- aCGCGGCGCUcccGGCGgUCcgaggcgAGCAUguUCGg -3'
miRNA:   3'- -GUGCUGCGA---CCGCaAG-------UCGUGguAGC- -5'
29509 3' -55.2 NC_006151.1 + 93952 0.66 0.914672
Target:  5'- cCGCGACGgaGGCGcacUCGGCGacgcgcgaGUCGa -3'
miRNA:   3'- -GUGCUGCgaCCGCa--AGUCGUgg------UAGC- -5'
29509 3' -55.2 NC_006151.1 + 27044 0.66 0.914672
Target:  5'- aGgGGCGCUGGCGcgugUAGC-CCAUgGc -3'
miRNA:   3'- gUgCUGCGACCGCaa--GUCGuGGUAgC- -5'
29509 3' -55.2 NC_006151.1 + 130887 0.66 0.914672
Target:  5'- gGCGGCGgUGGagg-CGGCgGCCGUCGc -3'
miRNA:   3'- gUGCUGCgACCgcaaGUCG-UGGUAGC- -5'
29509 3' -55.2 NC_006151.1 + 19513 0.66 0.914672
Target:  5'- gGgGACGCaGGCGcggccCAGCACCAggucCGg -3'
miRNA:   3'- gUgCUGCGaCCGCaa---GUCGUGGUa---GC- -5'
29509 3' -55.2 NC_006151.1 + 3115 0.66 0.912297
Target:  5'- cCGCGGCGCgggucccaggccgGGCGcggGGCGCCcUCGg -3'
miRNA:   3'- -GUGCUGCGa------------CCGCaagUCGUGGuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.