miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29509 5' -64.8 NC_006151.1 + 116839 0.66 0.528441
Target:  5'- gGUCCucGGGGUUCUcGGCGgCGGGGa-- -3'
miRNA:   3'- -CAGG--UCCCAGGGcCCGUgGCCCCagu -5'
29509 5' -64.8 NC_006151.1 + 126024 0.66 0.528441
Target:  5'- uUCCAGGG-CCUcggcgacguGGGCGCCGccGUCGg -3'
miRNA:   3'- cAGGUCCCaGGG---------CCCGUGGCccCAGU- -5'
29509 5' -64.8 NC_006151.1 + 90752 0.66 0.519139
Target:  5'- -cUCGGGGgcggCGGGCACgguggCGGGGUCGg -3'
miRNA:   3'- caGGUCCCagg-GCCCGUG-----GCCCCAGU- -5'
29509 5' -64.8 NC_006151.1 + 6003 0.66 0.519139
Target:  5'- -aCCGGGGgaCCCGGcgGCCGGGGa-- -3'
miRNA:   3'- caGGUCCCa-GGGCCcgUGGCCCCagu -5'
29509 5' -64.8 NC_006151.1 + 96658 0.66 0.519139
Target:  5'- -gCgAGGG-CCCGGGCGacguccUCGGGG-CAg -3'
miRNA:   3'- caGgUCCCaGGGCCCGU------GGCCCCaGU- -5'
29509 5' -64.8 NC_006151.1 + 61323 0.66 0.518212
Target:  5'- gGUCCAGGGagacgCCCGGccagcggcugcGCACCacggccgGGaGGUCGc -3'
miRNA:   3'- -CAGGUCCCa----GGGCC-----------CGUGG-------CC-CCAGU- -5'
29509 5' -64.8 NC_006151.1 + 54602 0.66 0.509903
Target:  5'- -cUCGGcguGGUCCCGGuGCGCCGGGcG-CGc -3'
miRNA:   3'- caGGUC---CCAGGGCC-CGUGGCCC-CaGU- -5'
29509 5' -64.8 NC_006151.1 + 27362 0.66 0.500736
Target:  5'- -gCCGGGG-CCCGGGC----GGGUCGa -3'
miRNA:   3'- caGGUCCCaGGGCCCGuggcCCCAGU- -5'
29509 5' -64.8 NC_006151.1 + 81743 0.66 0.499823
Target:  5'- gGUCCAGGcggcgcggagcugGUCCgCGGGCGCCaccGGGa-- -3'
miRNA:   3'- -CAGGUCC-------------CAGG-GCCCGUGGc--CCCagu -5'
29509 5' -64.8 NC_006151.1 + 8383 0.66 0.491643
Target:  5'- -cCCGGGGgggUCCGGGauggggGGGGUCAa -3'
miRNA:   3'- caGGUCCCa--GGGCCCgugg--CCCCAGU- -5'
29509 5' -64.8 NC_006151.1 + 21415 0.66 0.482626
Target:  5'- gGUgCGGcGUCUCGGGCcuCgGGGGUCGc -3'
miRNA:   3'- -CAgGUCcCAGGGCCCGu-GgCCCCAGU- -5'
29509 5' -64.8 NC_006151.1 + 5026 0.66 0.482626
Target:  5'- cUCCGGGG--CCGGG-GCCGGGGa-- -3'
miRNA:   3'- cAGGUCCCagGGCCCgUGGCCCCagu -5'
29509 5' -64.8 NC_006151.1 + 142706 0.66 0.477255
Target:  5'- gGUCUGGGGccagcucuccCCCGGGCccccacaacucucugGCCGGGGg-- -3'
miRNA:   3'- -CAGGUCCCa---------GGGCCCG---------------UGGCCCCagu -5'
29509 5' -64.8 NC_006151.1 + 88864 0.67 0.464839
Target:  5'- -cCCGcGGGagcUCCGGGCGCgGGGGcUCGu -3'
miRNA:   3'- caGGU-CCCa--GGGCCCGUGgCCCC-AGU- -5'
29509 5' -64.8 NC_006151.1 + 67515 0.67 0.464839
Target:  5'- cGUCC-GGGUCCaGGGCcaccaggcgccaGCCGGcGUCGu -3'
miRNA:   3'- -CAGGuCCCAGGgCCCG------------UGGCCcCAGU- -5'
29509 5' -64.8 NC_006151.1 + 21550 0.67 0.459569
Target:  5'- -gCCGGGG-CCUGGGCcucggcgaGCCcgccgagggccgcgcGGGGUCGa -3'
miRNA:   3'- caGGUCCCaGGGCCCG--------UGG---------------CCCCAGU- -5'
29509 5' -64.8 NC_006151.1 + 73215 0.67 0.447398
Target:  5'- -gCCAGGc-CCgCGGGCACCuGGGG-CAg -3'
miRNA:   3'- caGGUCCcaGG-GCCCGUGG-CCCCaGU- -5'
29509 5' -64.8 NC_006151.1 + 5928 0.67 0.447398
Target:  5'- -gCCGGGG-CCCGGaGCcggcccgggACCGGGGcCc -3'
miRNA:   3'- caGGUCCCaGGGCC-CG---------UGGCCCCaGu -5'
29509 5' -64.8 NC_006151.1 + 21062 0.67 0.447398
Target:  5'- --gCGGGGUCa-GGGCgGCCaGGGUCAg -3'
miRNA:   3'- cagGUCCCAGggCCCG-UGGcCCCAGU- -5'
29509 5' -64.8 NC_006151.1 + 41132 0.67 0.438816
Target:  5'- gGUCCcgAGGGUCCCGGuGguCCcGGG-CGg -3'
miRNA:   3'- -CAGG--UCCCAGGGCC-CguGGcCCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.