miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29510 3' -62.1 NC_006151.1 + 59660 0.66 0.652887
Target:  5'- cGCUGCgca--GCGCCuCGGGgacGCGCg -3'
miRNA:   3'- cCGACGacacaCGCGG-GCCCa--CGCGg -5'
29510 3' -62.1 NC_006151.1 + 38031 0.66 0.652887
Target:  5'- cGGCUGCcc---GCGCCCGcccGCGCCc -3'
miRNA:   3'- -CCGACGacacaCGCGGGCccaCGCGG- -5'
29510 3' -62.1 NC_006151.1 + 81347 0.66 0.643033
Target:  5'- cGCcGCcGcc-GCGCCCGGGgccccggcggGCGCCa -3'
miRNA:   3'- cCGaCGaCacaCGCGGGCCCa---------CGCGG- -5'
29510 3' -62.1 NC_006151.1 + 81988 0.66 0.643033
Target:  5'- gGGCUGCaccacgGcGgccaggGCGgCCGcGUGCGCCg -3'
miRNA:   3'- -CCGACGa-----CaCa-----CGCgGGCcCACGCGG- -5'
29510 3' -62.1 NC_006151.1 + 92669 0.66 0.643033
Target:  5'- -cCUGCUGccgGCGgCCGGGgacGCGCg -3'
miRNA:   3'- ccGACGACacaCGCgGGCCCa--CGCGg -5'
29510 3' -62.1 NC_006151.1 + 131536 0.66 0.643033
Target:  5'- cGCUGCUcuUGcgaGCGCCUcGG-GCGCCg -3'
miRNA:   3'- cCGACGAc-ACa--CGCGGGcCCaCGCGG- -5'
29510 3' -62.1 NC_006151.1 + 90727 0.66 0.633171
Target:  5'- cGGCgGCgacgGUGgcggcgGCGCCCucGGGgGCGgCg -3'
miRNA:   3'- -CCGaCGa---CACa-----CGCGGG--CCCaCGCgG- -5'
29510 3' -62.1 NC_006151.1 + 83683 0.66 0.633171
Target:  5'- aGGCUGCcGUucUGCuUCCGGGUcuGCGCa -3'
miRNA:   3'- -CCGACGaCAc-ACGcGGGCCCA--CGCGg -5'
29510 3' -62.1 NC_006151.1 + 2298 0.66 0.633171
Target:  5'- cGGCgGCgacg-GCGCCCGGGgucaGCaCCa -3'
miRNA:   3'- -CCGaCGacacaCGCGGGCCCa---CGcGG- -5'
29510 3' -62.1 NC_006151.1 + 127841 0.66 0.623308
Target:  5'- uGGCgGCgucgcgGcUGCGCCggaGGGgGCGCCg -3'
miRNA:   3'- -CCGaCGaca---C-ACGCGGg--CCCaCGCGG- -5'
29510 3' -62.1 NC_006151.1 + 56590 0.66 0.623308
Target:  5'- gGGCUGgUGcGgacGCGCCCcGGcgGCGCg -3'
miRNA:   3'- -CCGACgACaCa--CGCGGGcCCa-CGCGg -5'
29510 3' -62.1 NC_006151.1 + 132804 0.66 0.623308
Target:  5'- aGGC-GCUG-GUacagcGCGUCCGGGcUG-GCCg -3'
miRNA:   3'- -CCGaCGACaCA-----CGCGGGCCC-ACgCGG- -5'
29510 3' -62.1 NC_006151.1 + 13942 0.66 0.623308
Target:  5'- cGGggGCg--G-GCGcCCCGGGgacGCGCCg -3'
miRNA:   3'- -CCgaCGacaCaCGC-GGGCCCa--CGCGG- -5'
29510 3' -62.1 NC_006151.1 + 47292 0.66 0.616407
Target:  5'- cGGCUGCUGUGaugggugggcggaGCGCggaCCGGGgauuauauacacgaUGUGCa -3'
miRNA:   3'- -CCGACGACACa------------CGCG---GGCCC--------------ACGCGg -5'
29510 3' -62.1 NC_006151.1 + 66869 0.66 0.613451
Target:  5'- gGGCgGCgcgaaggGcGCGCCCGGccccGCGCCg -3'
miRNA:   3'- -CCGaCGaca----CaCGCGGGCCca--CGCGG- -5'
29510 3' -62.1 NC_006151.1 + 103991 0.66 0.613451
Target:  5'- aGGCgGCcGUG-GCGgCCGuGGaggcGCGCCg -3'
miRNA:   3'- -CCGaCGaCACaCGCgGGC-CCa---CGCGG- -5'
29510 3' -62.1 NC_006151.1 + 103943 0.66 0.613451
Target:  5'- aGCUGCaGaagaUG-GCGCUCGcGGcGCGCCa -3'
miRNA:   3'- cCGACGaC----ACaCGCGGGC-CCaCGCGG- -5'
29510 3' -62.1 NC_006151.1 + 114117 0.66 0.613451
Target:  5'- cGGCUGCUGccccacGUGCGCCgccgccgagccgCGGcucggGCGCa -3'
miRNA:   3'- -CCGACGACa-----CACGCGG------------GCCca---CGCGg -5'
29510 3' -62.1 NC_006151.1 + 68764 0.66 0.603607
Target:  5'- aGCcgGCgGUG-GCGCgCGcggcgaGGUGCGCCg -3'
miRNA:   3'- cCGa-CGaCACaCGCGgGC------CCACGCGG- -5'
29510 3' -62.1 NC_006151.1 + 103537 0.66 0.602624
Target:  5'- cGGCgcGCUG-GUGggcgccgggcagcCGCUCGGG-GCGCUg -3'
miRNA:   3'- -CCGa-CGACaCAC-------------GCGGGCCCaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.