miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29510 5' -54.2 NC_006151.1 + 114901 0.66 0.954428
Target:  5'- -gGGCGcgaGGcCCGGGCgCACGGCCcCGg -3'
miRNA:   3'- caCUGU---UCaGGCUCGgGUGUUGGuGC- -5'
29510 5' -54.2 NC_006151.1 + 14900 0.66 0.954428
Target:  5'- -cGACccGcCCGGGCCC-CGGcCCACGa -3'
miRNA:   3'- caCUGuuCaGGCUCGGGuGUU-GGUGC- -5'
29510 5' -54.2 NC_006151.1 + 31260 0.66 0.954428
Target:  5'- -gGGCGAGcCgGGGCCCcCGGCC-CGc -3'
miRNA:   3'- caCUGUUCaGgCUCGGGuGUUGGuGC- -5'
29510 5' -54.2 NC_006151.1 + 36817 0.66 0.954428
Target:  5'- -cGuCGAGaCCGucGCCCGCGGCCcCGa -3'
miRNA:   3'- caCuGUUCaGGCu-CGGGUGUUGGuGC- -5'
29510 5' -54.2 NC_006151.1 + 76917 0.66 0.954428
Target:  5'- -cGGCAuccGGUCCcGGgCCACGuuccgcGCCACGa -3'
miRNA:   3'- caCUGU---UCAGGcUCgGGUGU------UGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 83390 0.66 0.954428
Target:  5'- gGUG-CucGUCCGGGUCCAgcgaGGCCACc -3'
miRNA:   3'- -CACuGuuCAGGCUCGGGUg---UUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 22562 0.66 0.951998
Target:  5'- cGUGGCGguagccgucguuccgGGcCCGGGCCCugAugaucGCCAUa -3'
miRNA:   3'- -CACUGU---------------UCaGGCUCGGGugU-----UGGUGc -5'
29510 5' -54.2 NC_006151.1 + 8239 0.66 0.950331
Target:  5'- -cGGCGGGgagggCCGGGCCgGCGcGCCGgGa -3'
miRNA:   3'- caCUGUUCa----GGCUCGGgUGU-UGGUgC- -5'
29510 5' -54.2 NC_006151.1 + 73457 0.66 0.950331
Target:  5'- cGUGagcuGCAGGUgC-AGCCCGCcGCCGCu -3'
miRNA:   3'- -CAC----UGUUCAgGcUCGGGUGuUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 37377 0.66 0.950331
Target:  5'- -cGACcc-UCCG-GCCgACGGCCGCGu -3'
miRNA:   3'- caCUGuucAGGCuCGGgUGUUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 67211 0.66 0.950331
Target:  5'- -cGGCA--UCCGcgucggcuacacGGCCCACAuccgcaagGCCACGg -3'
miRNA:   3'- caCUGUucAGGC------------UCGGGUGU--------UGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 92810 0.66 0.950331
Target:  5'- cGUGACAAgGUCUuuGGCUCGCuGCUGCGg -3'
miRNA:   3'- -CACUGUU-CAGGc-UCGGGUGuUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 141317 0.66 0.950331
Target:  5'- -gGGCGGGUCCGGGauggucaCCGCGuaCGCGg -3'
miRNA:   3'- caCUGUUCAGGCUCg------GGUGUugGUGC- -5'
29510 5' -54.2 NC_006151.1 + 113258 0.66 0.945994
Target:  5'- -aGcACGAGggcuUCCuGGCCCGCAacaccGCCGCGg -3'
miRNA:   3'- caC-UGUUC----AGGcUCGGGUGU-----UGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 53304 0.66 0.945994
Target:  5'- --aGCGAGUCCgucugcgugggcGAGCCCACAcagacgAgCACGg -3'
miRNA:   3'- cacUGUUCAGG------------CUCGGGUGU------UgGUGC- -5'
29510 5' -54.2 NC_006151.1 + 124071 0.66 0.945994
Target:  5'- -gGACGg--CCGuGCgCGCGGCCGCGa -3'
miRNA:   3'- caCUGUucaGGCuCGgGUGUUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 74066 0.66 0.945994
Target:  5'- aUGGC--GUCCGcGUCCACGGCgACGc -3'
miRNA:   3'- cACUGuuCAGGCuCGGGUGUUGgUGC- -5'
29510 5' -54.2 NC_006151.1 + 102368 0.66 0.945994
Target:  5'- -cGACGcGUCCGcGCCCGUGGCCAa- -3'
miRNA:   3'- caCUGUuCAGGCuCGGGUGUUGGUgc -5'
29510 5' -54.2 NC_006151.1 + 106627 0.66 0.945994
Target:  5'- -cGACGccgcGGUcaCCGAGCgCCugGacGCCGCGg -3'
miRNA:   3'- caCUGU----UCA--GGCUCG-GGugU--UGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 129532 0.66 0.941416
Target:  5'- -cGACGGGg--GGGCCCGgGGCCGCc -3'
miRNA:   3'- caCUGUUCaggCUCGGGUgUUGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.