miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29510 5' -54.2 NC_006151.1 + 17748 1.08 0.004488
Target:  5'- uGUGACAAGUCCGAGCCCACAACCACGu -3'
miRNA:   3'- -CACUGUUCAGGCUCGGGUGUUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 108550 0.77 0.423272
Target:  5'- -gGACAucGGacUCCGAGCCCGCGuCCGCGu -3'
miRNA:   3'- caCUGU--UC--AGGCUCGGGUGUuGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 77448 0.74 0.548368
Target:  5'- -cGGCAAGUUCGGGCUCAC-GCUGCGc -3'
miRNA:   3'- caCUGUUCAGGCUCGGGUGuUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 36241 0.74 0.568779
Target:  5'- -gGACGAGcCCGGGUCCcCGGCCGCc -3'
miRNA:   3'- caCUGUUCaGGCUCGGGuGUUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 5729 0.74 0.579057
Target:  5'- gGUGGCGccggGGUCCGAGgCCGC-GCCGCc -3'
miRNA:   3'- -CACUGU----UCAGGCUCgGGUGuUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 54724 0.73 0.599723
Target:  5'- -gGACGAGguggCCGAGCUCGCcgaGGCCAUGc -3'
miRNA:   3'- caCUGUUCa---GGCUCGGGUG---UUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 37446 0.73 0.620488
Target:  5'- -gGACGAcGUCCGccaggccgcGGCCCGCuACCGCGc -3'
miRNA:   3'- caCUGUU-CAGGC---------UCGGGUGuUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 60167 0.73 0.641289
Target:  5'- -cGGCcAGcCCGAGCCCACGACgugguucagcagCACGg -3'
miRNA:   3'- caCUGuUCaGGCUCGGGUGUUG------------GUGC- -5'
29510 5' -54.2 NC_006151.1 + 130710 0.73 0.641289
Target:  5'- -cGACGGGgcggCCcggGGGCCCGCGcgGCCGCGg -3'
miRNA:   3'- caCUGUUCa---GG---CUCGGGUGU--UGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 67508 0.72 0.662061
Target:  5'- -cGGCucgcGUCCGGGUCCAgGGCCACc -3'
miRNA:   3'- caCUGuu--CAGGCUCGGGUgUUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 110434 0.72 0.693008
Target:  5'- -gGGCccGAGUCCGGGCCCAaaGACUugGu -3'
miRNA:   3'- caCUG--UUCAGGCUCGGGUg-UUGGugC- -5'
29510 5' -54.2 NC_006151.1 + 131452 0.72 0.693008
Target:  5'- -gGGCGgaAGUCCGGGCgCCGCAccucgcCCACGa -3'
miRNA:   3'- caCUGU--UCAGGCUCG-GGUGUu-----GGUGC- -5'
29510 5' -54.2 NC_006151.1 + 4111 0.72 0.703231
Target:  5'- -cGACAgAGUCCGcGGCCUGCcGCCGCu -3'
miRNA:   3'- caCUGU-UCAGGC-UCGGGUGuUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 36333 0.71 0.713392
Target:  5'- -gGGCcGGcUCCGGGCCC-CGGCCGCc -3'
miRNA:   3'- caCUGuUC-AGGCUCGGGuGUUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 65298 0.71 0.713392
Target:  5'- uUGACGuccAGguggCUGAGCCCGCGGCCGu- -3'
miRNA:   3'- cACUGU---UCa---GGCUCGGGUGUUGGUgc -5'
29510 5' -54.2 NC_006151.1 + 72812 0.71 0.723482
Target:  5'- -cGACGAGcucgCCGGcGCCCACgGGCCGCu -3'
miRNA:   3'- caCUGUUCa---GGCU-CGGGUG-UUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 23164 0.71 0.723482
Target:  5'- -cGGCGGGa--GAGCCCACGACCuCGa -3'
miRNA:   3'- caCUGUUCaggCUCGGGUGUUGGuGC- -5'
29510 5' -54.2 NC_006151.1 + 107295 0.71 0.73349
Target:  5'- -cGGCcGG-CCGAGCuuCCGCAACCugGg -3'
miRNA:   3'- caCUGuUCaGGCUCG--GGUGUUGGugC- -5'
29510 5' -54.2 NC_006151.1 + 90885 0.71 0.743408
Target:  5'- -cGGCGu-UCCcGGCCCGCAGCCGCu -3'
miRNA:   3'- caCUGUucAGGcUCGGGUGUUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 1846 0.7 0.77252
Target:  5'- -cGAgGGGaCCGAGgCCGCcGCCGCGg -3'
miRNA:   3'- caCUgUUCaGGCUCgGGUGuUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.