miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29510 5' -54.2 NC_006151.1 + 1669 0.67 0.92621
Target:  5'- -gGACGAuccuccgccgCCGAGCCCuCcGCCGCGg -3'
miRNA:   3'- caCUGUUca--------GGCUCGGGuGuUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 1846 0.7 0.77252
Target:  5'- -cGAgGGGaCCGAGgCCGCcGCCGCGg -3'
miRNA:   3'- caCUgUUCaGGCUCgGGUGuUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 2096 0.67 0.911237
Target:  5'- uUGAUggGcCCGAGCgggCCGCGgggccggccgucgccGCCGCGg -3'
miRNA:   3'- cACUGuuCaGGCUCG---GGUGU---------------UGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 2456 0.67 0.914246
Target:  5'- --aGCGGGgcgCCGAGCCCcCAgcgguugGCCGCGc -3'
miRNA:   3'- cacUGUUCa--GGCUCGGGuGU-------UGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 2739 0.69 0.838832
Target:  5'- --aGCAGG-CCGGGCCCACGAUggagcuagaguccagCACGg -3'
miRNA:   3'- cacUGUUCaGGCUCGGGUGUUG---------------GUGC- -5'
29510 5' -54.2 NC_006151.1 + 3726 0.69 0.827
Target:  5'- -gGGCGcugGGUCCGGGCCgGCGGCgGgGg -3'
miRNA:   3'- caCUGU---UCAGGCUCGGgUGUUGgUgC- -5'
29510 5' -54.2 NC_006151.1 + 3983 0.69 0.859782
Target:  5'- -cGGCGAG-CCG-G-CCGCGGCCACGu -3'
miRNA:   3'- caCUGUUCaGGCuCgGGUGUUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 4111 0.72 0.703231
Target:  5'- -cGACAgAGUCCGcGGCCUGCcGCCGCu -3'
miRNA:   3'- caCUGU-UCAGGC-UCGGGUGuUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 4777 0.69 0.843788
Target:  5'- -aGACGGG-CaCGGGCCCG--GCCGCGg -3'
miRNA:   3'- caCUGUUCaG-GCUCGGGUguUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 5019 0.67 0.91484
Target:  5'- -gGGCGGGcUCCGGGgCCGgGGCCGgGg -3'
miRNA:   3'- caCUGUUC-AGGCUCgGGUgUUGGUgC- -5'
29510 5' -54.2 NC_006151.1 + 5221 0.69 0.827
Target:  5'- -gGACGAGgaggaggCCGAGCgCCGCGcgGCgGCGg -3'
miRNA:   3'- caCUGUUCa------GGCUCG-GGUGU--UGgUGC- -5'
29510 5' -54.2 NC_006151.1 + 5290 0.66 0.936593
Target:  5'- -gGAgAGGUCCGAG-UCGCuGCCGCu -3'
miRNA:   3'- caCUgUUCAGGCUCgGGUGuUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 5409 0.68 0.898595
Target:  5'- -cGGCGAGgCCGAGUCCguccucguccuucucGgGGCCGCGg -3'
miRNA:   3'- caCUGUUCaGGCUCGGG---------------UgUUGGUGC- -5'
29510 5' -54.2 NC_006151.1 + 5729 0.74 0.579057
Target:  5'- gGUGGCGccggGGUCCGAGgCCGC-GCCGCc -3'
miRNA:   3'- -CACUGU----UCAGGCUCgGGUGuUGGUGc -5'
29510 5' -54.2 NC_006151.1 + 8239 0.66 0.950331
Target:  5'- -cGGCGGGgagggCCGGGCCgGCGcGCCGgGa -3'
miRNA:   3'- caCUGUUCa----GGCUCGGgUGU-UGGUgC- -5'
29510 5' -54.2 NC_006151.1 + 13416 0.67 0.908786
Target:  5'- -gGGgGAG-CCGGGCCCGCGuCCcCGg -3'
miRNA:   3'- caCUgUUCaGGCUCGGGUGUuGGuGC- -5'
29510 5' -54.2 NC_006151.1 + 13975 0.67 0.908786
Target:  5'- -gGGgGAG-CCGGGCCCGCGuCCcCGg -3'
miRNA:   3'- caCUgUUCaGGCUCGGGUGUuGGuGC- -5'
29510 5' -54.2 NC_006151.1 + 14900 0.66 0.954428
Target:  5'- -cGACccGcCCGGGCCC-CGGcCCACGa -3'
miRNA:   3'- caCUGuuCaGGCUCGGGuGUU-GGUGC- -5'
29510 5' -54.2 NC_006151.1 + 17546 0.67 0.902489
Target:  5'- --cACAGGUCCGGgugcgccucGCCCACGAagGCGg -3'
miRNA:   3'- cacUGUUCAGGCU---------CGGGUGUUggUGC- -5'
29510 5' -54.2 NC_006151.1 + 17748 1.08 0.004488
Target:  5'- uGUGACAAGUCCGAGCCCACAACCACGu -3'
miRNA:   3'- -CACUGUUCAGGCUCGGGUGUUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.