miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29511 5' -57.4 NC_006151.1 + 77186 0.66 0.845867
Target:  5'- cGUCCAcGUCCgccgccgcGUCCu-CCAUCCCCGCg -3'
miRNA:   3'- -UAGGU-UAGG--------UAGGucGGUGGGGGUGg -5'
29511 5' -57.4 NC_006151.1 + 138569 0.66 0.845867
Target:  5'- --gCGA-CCGUcgCCcGCCugCCCCACCc -3'
miRNA:   3'- uagGUUaGGUA--GGuCGGugGGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 136945 0.66 0.845867
Target:  5'- -gCCGAcggcgCCGUCCugcGCCGCCUgcuggagcuggCCGCCg -3'
miRNA:   3'- uaGGUUa----GGUAGGu--CGGUGGG-----------GGUGG- -5'
29511 5' -57.4 NC_006151.1 + 9467 0.66 0.845867
Target:  5'- uUCCGcGUCCGcUUCGGCCcCCCgCgGCCg -3'
miRNA:   3'- uAGGU-UAGGU-AGGUCGGuGGG-GgUGG- -5'
29511 5' -57.4 NC_006151.1 + 66132 0.66 0.841008
Target:  5'- cUCCAc-CCGggcggCCAGCCGCagguggcgcucuacaUCCCGCCg -3'
miRNA:   3'- uAGGUuaGGUa----GGUCGGUG---------------GGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 67521 0.66 0.838553
Target:  5'- gGUCCAGggCCA-CCAGgCGCCagccggcgucguugaCCACCa -3'
miRNA:   3'- -UAGGUUa-GGUaGGUCgGUGGg--------------GGUGG- -5'
29511 5' -57.4 NC_006151.1 + 11275 0.66 0.83773
Target:  5'- cUCCuccCCGUCCccguccCCGuCCCCCGCCc -3'
miRNA:   3'- uAGGuuaGGUAGGuc----GGU-GGGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 37374 0.66 0.83773
Target:  5'- cUCCGAcccUCCGgccgaCGGCCGCgUCCGCUa -3'
miRNA:   3'- uAGGUU---AGGUag---GUCGGUGgGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 109105 0.66 0.83773
Target:  5'- -cCCAGUgaggcgagCCG-CCGGcCCGCgCCCGCCg -3'
miRNA:   3'- uaGGUUA--------GGUaGGUC-GGUGgGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 122996 0.66 0.83773
Target:  5'- --aCGAagaCGggcCCGGCgCGCCCCCGCCg -3'
miRNA:   3'- uagGUUag-GUa--GGUCG-GUGGGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 87468 0.66 0.829406
Target:  5'- nUCCGGcUCCAgcagcggCAGCCGCCgCgGCCg -3'
miRNA:   3'- uAGGUU-AGGUag-----GUCGGUGGgGgUGG- -5'
29511 5' -57.4 NC_006151.1 + 106517 0.66 0.829406
Target:  5'- -gCCGugCCGggcgcgCUGGCCACCUUCACCg -3'
miRNA:   3'- uaGGUuaGGUa-----GGUCGGUGGGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 27616 0.66 0.829406
Target:  5'- -aCCGGaCCcgagcCCGGCCGCCCCgACg -3'
miRNA:   3'- uaGGUUaGGua---GGUCGGUGGGGgUGg -5'
29511 5' -57.4 NC_006151.1 + 48683 0.66 0.829406
Target:  5'- -gCCGGggCCucgaagCCGGCCcgACCCuCCGCCg -3'
miRNA:   3'- uaGGUUa-GGua----GGUCGG--UGGG-GGUGG- -5'
29511 5' -57.4 NC_006151.1 + 12551 0.66 0.824325
Target:  5'- uUCCucUUCGUCCuccggacccucgguGCCGcgauCCCCCACCc -3'
miRNA:   3'- uAGGuuAGGUAGGu-------------CGGU----GGGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 64620 0.66 0.820902
Target:  5'- -gCCGcgCCG-CCGGCCGCggggcgcggcgCCCCGCg -3'
miRNA:   3'- uaGGUuaGGUaGGUCGGUG-----------GGGGUGg -5'
29511 5' -57.4 NC_006151.1 + 48195 0.66 0.820902
Target:  5'- cUUCGAgCCG-CCGGUCAcgcccgcgcCCCCCACCc -3'
miRNA:   3'- uAGGUUaGGUaGGUCGGU---------GGGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 50822 0.66 0.814845
Target:  5'- cGUCCAcgCCucggcccgcgccgccGUCCccucggcGGCCGCCCUC-CCg -3'
miRNA:   3'- -UAGGUuaGG---------------UAGG-------UCGGUGGGGGuGG- -5'
29511 5' -57.4 NC_006151.1 + 93333 0.66 0.812225
Target:  5'- cUCCcAUCCccguUCCcgucCCACCCUCGCCc -3'
miRNA:   3'- uAGGuUAGGu---AGGuc--GGUGGGGGUGG- -5'
29511 5' -57.4 NC_006151.1 + 78259 0.66 0.812225
Target:  5'- -aCCAGUUCAUCCuGGCCcGCUggcaCCUGCCg -3'
miRNA:   3'- uaGGUUAGGUAGG-UCGG-UGG----GGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.