miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29512 3' -43.1 NC_006151.1 + 20122 0.66 1
Target:  5'- gGCgacGGGGCUGgggggcgggCGCCGCggggGCg -3'
miRNA:   3'- -CGau-UUUCGAUaaaaua---GCGGCGa---CG- -5'
29512 3' -43.1 NC_006151.1 + 85929 0.67 1
Target:  5'- --gAGGGGCUGggcc--UGCUGCUGCa -3'
miRNA:   3'- cgaUUUUCGAUaaaauaGCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 5880 0.66 1
Target:  5'- cGCcGGGGGCcccggccUCuGCCGCUGCg -3'
miRNA:   3'- -CGaUUUUCGauaaaauAG-CGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 31004 0.66 1
Target:  5'- aGgaGGGAGgaAggggGUCGCCGCcGCg -3'
miRNA:   3'- -CgaUUUUCgaUaaaaUAGCGGCGaCG- -5'
29512 3' -43.1 NC_006151.1 + 47521 0.66 1
Target:  5'- cGCUAAuuGCaGUaacg-CGCgGCUGCc -3'
miRNA:   3'- -CGAUUuuCGaUAaaauaGCGgCGACG- -5'
29512 3' -43.1 NC_006151.1 + 104867 0.66 1
Target:  5'- gGCgacGGAGCgcgccacgCGCCuGCUGCg -3'
miRNA:   3'- -CGau-UUUCGauaaaauaGCGG-CGACG- -5'
29512 3' -43.1 NC_006151.1 + 107582 0.66 1
Target:  5'- aGCUGAcucccgccgccAAGCUGgccccgccggCGCCGCcGCc -3'
miRNA:   3'- -CGAUU-----------UUCGAUaaaaua----GCGGCGaCG- -5'
29512 3' -43.1 NC_006151.1 + 112598 0.66 1
Target:  5'- -gUGGAGGCcgccgcggCGCCGCUGg -3'
miRNA:   3'- cgAUUUUCGauaaaauaGCGGCGACg -5'
29512 3' -43.1 NC_006151.1 + 85485 0.66 1
Target:  5'- -----cGGCgaggacg-CGCCGCUGCu -3'
miRNA:   3'- cgauuuUCGauaaaauaGCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 5713 0.66 1
Target:  5'- cGCUGcuGGCUGUgcUGguggCGCCGggGUc -3'
miRNA:   3'- -CGAUuuUCGAUAaaAUa---GCGGCgaCG- -5'
29512 3' -43.1 NC_006151.1 + 100886 0.66 1
Target:  5'- cCUGGAGGUgcug----CGCCGCgGCg -3'
miRNA:   3'- cGAUUUUCGauaaaauaGCGGCGaCG- -5'
29512 3' -43.1 NC_006151.1 + 17450 0.66 1
Target:  5'- --gAGGAGCgcagcaccacgUGUUGCCGCgGCg -3'
miRNA:   3'- cgaUUUUCGauaaa------AUAGCGGCGaCG- -5'
29512 3' -43.1 NC_006151.1 + 106362 0.66 1
Target:  5'- cGCUGGAcgcgGGCgcgcgcc-CGCCGCgGCg -3'
miRNA:   3'- -CGAUUU----UCGauaaaauaGCGGCGaCG- -5'
29512 3' -43.1 NC_006151.1 + 104272 0.67 0.999999
Target:  5'- gGCgc--GGCggcgggccCGCCGCUGCa -3'
miRNA:   3'- -CGauuuUCGauaaaauaGCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 84890 0.67 0.999999
Target:  5'- cGCUGGAcuuccuGGCcAUggUGUaCGCCGCgcgcgGCg -3'
miRNA:   3'- -CGAUUU------UCGaUAaaAUA-GCGGCGa----CG- -5'
29512 3' -43.1 NC_006151.1 + 100624 0.67 0.999999
Target:  5'- cGCUGGGAcCUGgucag-CGCCGCgcUGCg -3'
miRNA:   3'- -CGAUUUUcGAUaaaauaGCGGCG--ACG- -5'
29512 3' -43.1 NC_006151.1 + 136970 0.67 0.999999
Target:  5'- uGCU-GGAGCUGgc----CGCCGCgccggGCg -3'
miRNA:   3'- -CGAuUUUCGAUaaaauaGCGGCGa----CG- -5'
29512 3' -43.1 NC_006151.1 + 109182 0.67 0.999999
Target:  5'- aGCUGGAGGgaGUcgUcgUGCCuCUGCc -3'
miRNA:   3'- -CGAUUUUCgaUAaaAuaGCGGcGACG- -5'
29512 3' -43.1 NC_006151.1 + 77828 0.67 0.999999
Target:  5'- uCUccGAGCUGccca---GCCGCUGCa -3'
miRNA:   3'- cGAuuUUCGAUaaaauagCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 85331 0.67 0.999999
Target:  5'- cGCUGGAgggccacAGCg---UgcUCGCCGCgcugGCg -3'
miRNA:   3'- -CGAUUU-------UCGauaaAauAGCGGCGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.