miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29512 3' -43.1 NC_006151.1 + 74426 0.68 0.999993
Target:  5'- uGCUGAAAGUgcg-----CGCCGUUGa -3'
miRNA:   3'- -CGAUUUUCGauaaaauaGCGGCGACg -5'
29512 3' -43.1 NC_006151.1 + 44173 0.68 0.999995
Target:  5'- cCUGGGAGCaccgcggGUCGCCGUccggGCg -3'
miRNA:   3'- cGAUUUUCGauaaaa-UAGCGGCGa---CG- -5'
29512 3' -43.1 NC_006151.1 + 132412 0.68 0.999995
Target:  5'- aGCUGccGGAGCUugccc-UCGUCGCgGCg -3'
miRNA:   3'- -CGAU--UUUCGAuaaaauAGCGGCGaCG- -5'
29512 3' -43.1 NC_006151.1 + 123876 0.68 0.999995
Target:  5'- uGCUGcu-GCUGgcgc-UCGCCGCgGCc -3'
miRNA:   3'- -CGAUuuuCGAUaaaauAGCGGCGaCG- -5'
29512 3' -43.1 NC_006151.1 + 17998 0.68 0.999997
Target:  5'- cGCUG--GGCgucucgUUGUCGCucuCGCUGUa -3'
miRNA:   3'- -CGAUuuUCGauaa--AAUAGCG---GCGACG- -5'
29512 3' -43.1 NC_006151.1 + 29414 0.68 0.999997
Target:  5'- cGCggaGAAGGCUcgg-UGUgGCCGCgggggGCg -3'
miRNA:   3'- -CGa--UUUUCGAuaaaAUAgCGGCGa----CG- -5'
29512 3' -43.1 NC_006151.1 + 59804 0.67 0.999997
Target:  5'- --cGAAGGUggccaccUCGCCGCUGUc -3'
miRNA:   3'- cgaUUUUCGauaaaauAGCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 109644 0.67 0.999999
Target:  5'- gGCgagAGGAGC--------CGCCGCUGCc -3'
miRNA:   3'- -CGa--UUUUCGauaaaauaGCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 136970 0.67 0.999999
Target:  5'- uGCU-GGAGCUGgc----CGCCGCgccggGCg -3'
miRNA:   3'- -CGAuUUUCGAUaaaauaGCGGCGa----CG- -5'
29512 3' -43.1 NC_006151.1 + 109182 0.67 0.999999
Target:  5'- aGCUGGAGGgaGUcgUcgUGCCuCUGCc -3'
miRNA:   3'- -CGAUUUUCgaUAaaAuaGCGGcGACG- -5'
29512 3' -43.1 NC_006151.1 + 77828 0.67 0.999999
Target:  5'- uCUccGAGCUGccca---GCCGCUGCa -3'
miRNA:   3'- cGAuuUUCGAUaaaauagCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 84890 0.67 0.999999
Target:  5'- cGCUGGAcuuccuGGCcAUggUGUaCGCCGCgcgcgGCg -3'
miRNA:   3'- -CGAUUU------UCGaUAaaAUA-GCGGCGa----CG- -5'
29512 3' -43.1 NC_006151.1 + 85331 0.67 0.999999
Target:  5'- cGCUGGAgggccacAGCg---UgcUCGCCGCgcugGCg -3'
miRNA:   3'- -CGAUUU-------UCGauaaAauAGCGGCGa---CG- -5'
29512 3' -43.1 NC_006151.1 + 104272 0.67 0.999999
Target:  5'- gGCgc--GGCggcgggccCGCCGCUGCa -3'
miRNA:   3'- -CGauuuUCGauaaaauaGCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 97447 0.67 0.999999
Target:  5'- aGCUGAGGGC------GUCGCCGa-GCu -3'
miRNA:   3'- -CGAUUUUCGauaaaaUAGCGGCgaCG- -5'
29512 3' -43.1 NC_006151.1 + 100624 0.67 0.999999
Target:  5'- cGCUGGGAcCUGgucag-CGCCGCgcUGCg -3'
miRNA:   3'- -CGAUUUUcGAUaaaauaGCGGCG--ACG- -5'
29512 3' -43.1 NC_006151.1 + 17450 0.66 1
Target:  5'- --gAGGAGCgcagcaccacgUGUUGCCGCgGCg -3'
miRNA:   3'- cgaUUUUCGauaaa------AUAGCGGCGaCG- -5'
29512 3' -43.1 NC_006151.1 + 112598 0.66 1
Target:  5'- -gUGGAGGCcgccgcggCGCCGCUGg -3'
miRNA:   3'- cgAUUUUCGauaaaauaGCGGCGACg -5'
29512 3' -43.1 NC_006151.1 + 85485 0.66 1
Target:  5'- -----cGGCgaggacg-CGCCGCUGCu -3'
miRNA:   3'- cgauuuUCGauaaaauaGCGGCGACG- -5'
29512 3' -43.1 NC_006151.1 + 5880 0.66 1
Target:  5'- cGCcGGGGGCcccggccUCuGCCGCUGCg -3'
miRNA:   3'- -CGaUUUUCGauaaaauAG-CGGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.