miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29512 5' -57.4 NC_006151.1 + 2232 0.68 0.708787
Target:  5'- cGGCgGCGGCGC--GGACGCUGgucUCg -3'
miRNA:   3'- aCCG-CGCCGCGgaUCUGUGGCaa-AGa -5'
29512 5' -57.4 NC_006151.1 + 2301 0.66 0.837992
Target:  5'- cGGCGaCGGCGCCcgGGgucaGCACCa----- -3'
miRNA:   3'- aCCGC-GCCGCGGa-UC----UGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 2805 0.67 0.785768
Target:  5'- -aGCGCacGGCGCaCUGGGCgGCCGggUCc -3'
miRNA:   3'- acCGCG--CCGCG-GAUCUG-UGGCaaAGa -5'
29512 5' -57.4 NC_006151.1 + 3245 0.73 0.44165
Target:  5'- cGGCGCGGCGgCggagcgGGGCGCCGcggCg -3'
miRNA:   3'- aCCGCGCCGCgGa-----UCUGUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 3278 0.68 0.738393
Target:  5'- cGGCGaUGuGCGCCaGGGCgGCCGggUCg -3'
miRNA:   3'- aCCGC-GC-CGCGGaUCUG-UGGCaaAGa -5'
29512 5' -57.4 NC_006151.1 + 3697 0.7 0.611294
Target:  5'- gGcGCGCGGCGCUUcuucuugcgccgcucGGGCGCUGggUCc -3'
miRNA:   3'- aC-CGCGCCGCGGA---------------UCUGUGGCaaAGa -5'
29512 5' -57.4 NC_006151.1 + 3888 0.68 0.718733
Target:  5'- cGGCGcCGGCGCUgGGACgacgagGCCGgg-CUg -3'
miRNA:   3'- aCCGC-GCCGCGGaUCUG------UGGCaaaGA- -5'
29512 5' -57.4 NC_006151.1 + 5080 0.68 0.698776
Target:  5'- gGGcCGCGGgGCCgcggcGGGCGCCGg--Cg -3'
miRNA:   3'- aCC-GCGCCgCGGa----UCUGUGGCaaaGa -5'
29512 5' -57.4 NC_006151.1 + 5124 0.67 0.785768
Target:  5'- cGGCGCgGGCGagugGGGCGCCGg---- -3'
miRNA:   3'- aCCGCG-CCGCgga-UCUGUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 5361 0.78 0.218341
Target:  5'- cGGCGCGGCGCCggcGGgGCUGUcUCUg -3'
miRNA:   3'- aCCGCGCCGCGGau-CUgUGGCAaAGA- -5'
29512 5' -57.4 NC_006151.1 + 9652 0.67 0.785768
Target:  5'- aGGCGCGGCGCCcc-GCGCUu----- -3'
miRNA:   3'- aCCGCGCCGCGGaucUGUGGcaaaga -5'
29512 5' -57.4 NC_006151.1 + 10528 0.67 0.757684
Target:  5'- cGGCGCgGGCGCCUcuccACGCCccgUUCc -3'
miRNA:   3'- aCCGCG-CCGCGGAuc--UGUGGca-AAGa -5'
29512 5' -57.4 NC_006151.1 + 11164 1.08 0.002251
Target:  5'- cUGGCGCGGCGCCUAGACACCGUUUCUg -3'
miRNA:   3'- -ACCGCGCCGCGGAUCUGUGGCAAAGA- -5'
29512 5' -57.4 NC_006151.1 + 15050 0.66 0.821248
Target:  5'- gGcGCGCGGgGCCccGGCGCC--UUCUg -3'
miRNA:   3'- aC-CGCGCCgCGGauCUGUGGcaAAGA- -5'
29512 5' -57.4 NC_006151.1 + 15085 0.66 0.821248
Target:  5'- cUGGCgccccgacacGCGGCGCCUcGGgGCCGa---- -3'
miRNA:   3'- -ACCG----------CGCCGCGGAuCUgUGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 16977 0.68 0.698776
Target:  5'- cGGCGUGGCGCCaggagcgguugUGGAC-CCGc---- -3'
miRNA:   3'- aCCGCGCCGCGG-----------AUCUGuGGCaaaga -5'
29512 5' -57.4 NC_006151.1 + 17093 0.7 0.627633
Target:  5'- aGGCGC-GCGCCcgucgGGGCGCCGggggCUc -3'
miRNA:   3'- aCCGCGcCGCGGa----UCUGUGGCaaa-GA- -5'
29512 5' -57.4 NC_006151.1 + 18311 0.66 0.837992
Target:  5'- gGaGCGgGGCGCCUccucgGGGCGCaCGUa--- -3'
miRNA:   3'- aC-CGCgCCGCGGA-----UCUGUG-GCAaaga -5'
29512 5' -57.4 NC_006151.1 + 18704 0.71 0.556613
Target:  5'- cGGCGcCGGCGUCguGACGCCGUc--- -3'
miRNA:   3'- aCCGC-GCCGCGGauCUGUGGCAaaga -5'
29512 5' -57.4 NC_006151.1 + 20150 0.72 0.488086
Target:  5'- gGGgGCGGCGCgUGGAcCGCCGg---- -3'
miRNA:   3'- aCCgCGCCGCGgAUCU-GUGGCaaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.