miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29513 3' -48.2 NC_006151.1 + 29478 0.68 0.993374
Target:  5'- -cGCCGGGAGAGGAa---AGGgcGCGc -3'
miRNA:   3'- aaUGGCUCUCUCCUcuuaUUCuuCGU- -5'
29513 3' -48.2 NC_006151.1 + 33041 0.68 0.992314
Target:  5'- -gACgGGGAGGGGGGGAUGcugccgcgGGuGGCAu -3'
miRNA:   3'- aaUGgCUCUCUCCUCUUAU--------UCuUCGU- -5'
29513 3' -48.2 NC_006151.1 + 1805 0.68 0.992314
Target:  5'- -gGCCG-GGGAGGcAGGcgccgGGGAGGCAa -3'
miRNA:   3'- aaUGGCuCUCUCC-UCUua---UUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 26251 0.68 0.991124
Target:  5'- -cACaacAGAGGGGAGGGggaGAGggGCAa -3'
miRNA:   3'- aaUGgc-UCUCUCCUCUUa--UUCuuCGU- -5'
29513 3' -48.2 NC_006151.1 + 44776 0.68 0.989793
Target:  5'- -cGCgGAGAGAGcGGGG---AGAAGCGg -3'
miRNA:   3'- aaUGgCUCUCUC-CUCUuauUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 29703 0.69 0.98831
Target:  5'- -cACCGAGGGuccGGAGGAcgAAGAGGa- -3'
miRNA:   3'- aaUGGCUCUCu--CCUCUUa-UUCUUCgu -5'
29513 3' -48.2 NC_006151.1 + 30022 0.69 0.98485
Target:  5'- -gGCagGAGGGGGGAGGAgggggggGAGGAGUg -3'
miRNA:   3'- aaUGg-CUCUCUCCUCUUa------UUCUUCGu -5'
29513 3' -48.2 NC_006151.1 + 96710 0.69 0.98485
Target:  5'- -cGCCGGGGGcGGcggcGGAcgAGGAGGCGg -3'
miRNA:   3'- aaUGGCUCUCuCC----UCUuaUUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 38598 0.69 0.982852
Target:  5'- --cCCGGGGacggcGAGGAGGAcGAGggGCu -3'
miRNA:   3'- aauGGCUCU-----CUCCUCUUaUUCuuCGu -5'
29513 3' -48.2 NC_006151.1 + 1759 0.7 0.978267
Target:  5'- -gGCCGGGggauccgcgcGGAGGAGAAgGAGAGGa- -3'
miRNA:   3'- aaUGGCUC----------UCUCCUCUUaUUCUUCgu -5'
29513 3' -48.2 NC_006151.1 + 6203 0.7 0.978267
Target:  5'- -gGCCGA-AGAGGAGAuccucgccgGAGGAGCc -3'
miRNA:   3'- aaUGGCUcUCUCCUCUua-------UUCUUCGu -5'
29513 3' -48.2 NC_006151.1 + 89602 0.7 0.978267
Target:  5'- -gGCCGuGAGGacgauggccGcGAGGAUGAGGAGCGu -3'
miRNA:   3'- aaUGGCuCUCU---------C-CUCUUAUUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 11724 0.7 0.978267
Target:  5'- ---aCGAGAGGGGGGAgcggggGUGAGggGgAg -3'
miRNA:   3'- aaugGCUCUCUCCUCU------UAUUCuuCgU- -5'
29513 3' -48.2 NC_006151.1 + 30874 0.7 0.975661
Target:  5'- -gGCgGAG-GAGGGGGG-AAGAGGCGg -3'
miRNA:   3'- aaUGgCUCuCUCCUCUUaUUCUUCGU- -5'
29513 3' -48.2 NC_006151.1 + 29656 0.7 0.972834
Target:  5'- -aAUgGGGGGAGGAGGAaggggggGGGggGCGg -3'
miRNA:   3'- aaUGgCUCUCUCCUCUUa------UUCuuCGU- -5'
29513 3' -48.2 NC_006151.1 + 16725 0.7 0.969777
Target:  5'- -aGCgGGGGGGGGGGAAggggGGGAAGgGg -3'
miRNA:   3'- aaUGgCUCUCUCCUCUUa---UUCUUCgU- -5'
29513 3' -48.2 NC_006151.1 + 1924 0.7 0.969777
Target:  5'- -gGCCGAGGgcGAGGGGA--GAGAAGaCGg -3'
miRNA:   3'- aaUGGCUCU--CUCCUCUuaUUCUUC-GU- -5'
29513 3' -48.2 NC_006151.1 + 10434 0.71 0.96294
Target:  5'- -gGCCGAGgccggcggggagGGAGGAGGAgGAGGAcGCGg -3'
miRNA:   3'- aaUGGCUC------------UCUCCUCUUaUUCUU-CGU- -5'
29513 3' -48.2 NC_006151.1 + 1642 0.71 0.959147
Target:  5'- -gACCGcGGGAGGAGGAgAAGggGa- -3'
miRNA:   3'- aaUGGCuCUCUCCUCUUaUUCuuCgu -5'
29513 3' -48.2 NC_006151.1 + 18418 0.71 0.955095
Target:  5'- -cGCCGGGGGAGGAGGGccgccGGCGg -3'
miRNA:   3'- aaUGGCUCUCUCCUCUUauucuUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.