Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29514 | 3' | -54.8 | NC_006151.1 | + | 66724 | 0.66 | 0.934532 |
Target: 5'- gUCAACcGCUUCGCgCUCcugucgcgGCGCUCcuUCCg -3' miRNA: 3'- -GGUUGuCGGAGUGaGAG--------CGCGAG--AGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 65838 | 0.66 | 0.934532 |
Target: 5'- gCCAgcGCGGCCcggcUCACgccucCUC-CGCUcCUCCa -3' miRNA: 3'- -GGU--UGUCGG----AGUGa----GAGcGCGA-GAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 72110 | 0.66 | 0.934532 |
Target: 5'- gCGGCAGCgUCAUggggaaGCGCagCUCCa -3' miRNA: 3'- gGUUGUCGgAGUGagag--CGCGa-GAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 56674 | 0.66 | 0.939401 |
Target: 5'- aCGACGGCgC-CGCg--CGCGCUCaCCg -3' miRNA: 3'- gGUUGUCG-GaGUGagaGCGCGAGaGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 39479 | 0.66 | 0.939401 |
Target: 5'- cCCGGguGCCgcgaGCUC-CGCGCgg-CCg -3' miRNA: 3'- -GGUUguCGGag--UGAGaGCGCGagaGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 133286 | 0.66 | 0.939401 |
Target: 5'- gCGGCGGCC-CACg-UCGagGUUCUCCc -3' miRNA: 3'- gGUUGUCGGaGUGagAGCg-CGAGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 28120 | 0.66 | 0.94403 |
Target: 5'- uCCucguCGGCUcggggcgCGCUC-CGCGCcUCUCCc -3' miRNA: 3'- -GGuu--GUCGGa------GUGAGaGCGCG-AGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 114067 | 0.66 | 0.94403 |
Target: 5'- gCCGACAacuGCCugUCGCUCUCGgGCa---- -3' miRNA: 3'- -GGUUGU---CGG--AGUGAGAGCgCGagagg -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 141488 | 0.66 | 0.948423 |
Target: 5'- uCCGAgAGCCUcCGCggcgaCGgGCgUCUCCa -3' miRNA: 3'- -GGUUgUCGGA-GUGaga--GCgCG-AGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 37197 | 0.66 | 0.948423 |
Target: 5'- gCCcuCGGCCUC-CUC-CGC-CUcCUCCu -3' miRNA: 3'- -GGuuGUCGGAGuGAGaGCGcGA-GAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 137315 | 0.66 | 0.948423 |
Target: 5'- gCCGcGCGGUgCUCgACgcgCUCGCGCUgCUCUu -3' miRNA: 3'- -GGU-UGUCG-GAG-UGa--GAGCGCGA-GAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 96406 | 0.66 | 0.948423 |
Target: 5'- aCGGCGGCCgccacCGCggggaUCaGCGCgagCUCCg -3' miRNA: 3'- gGUUGUCGGa----GUGag---AG-CGCGa--GAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 96496 | 0.66 | 0.948423 |
Target: 5'- aCCAGCuuGCCgcaggcCACguacaCGCGCUCgUCCa -3' miRNA: 3'- -GGUUGu-CGGa-----GUGaga--GCGCGAG-AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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