Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29514 | 3' | -54.8 | NC_006151.1 | + | 64405 | 0.72 | 0.689225 |
Target: 5'- gCAGCAGCguccacaggucgcuCUCGCUCUgCGCGCgcguggccgcCUCCa -3' miRNA: 3'- gGUUGUCG--------------GAGUGAGA-GCGCGa---------GAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 82025 | 0.72 | 0.668836 |
Target: 5'- gCCGACAGCUgggcgagguagucgUCGCUCUCGUGCa---- -3' miRNA: 3'- -GGUUGUCGG--------------AGUGAGAGCGCGagagg -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 51073 | 0.73 | 0.630848 |
Target: 5'- gCGGCGGCCUCcuccGCUCgccCGCccCUCUCCg -3' miRNA: 3'- gGUUGUCGGAG----UGAGa--GCGc-GAGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 7647 | 0.73 | 0.620566 |
Target: 5'- aCCcGC-GCCUCGCgCUCgGCGCgcgCUCCg -3' miRNA: 3'- -GGuUGuCGGAGUGaGAG-CGCGa--GAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 55570 | 0.73 | 0.589804 |
Target: 5'- gCCAACAGCUUC-CagUCGCGCUaCgugCCg -3' miRNA: 3'- -GGUUGUCGGAGuGagAGCGCGA-Ga--GG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 57481 | 0.74 | 0.579602 |
Target: 5'- gCGGCGGCCUCGCaggCgacgcgcaCGCGCUCggCCg -3' miRNA: 3'- gGUUGUCGGAGUGa--Ga-------GCGCGAGa-GG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 29856 | 0.74 | 0.579602 |
Target: 5'- cCCAGCccCCUCuccaguucccGCUCUCGCuCUCUCCu -3' miRNA: 3'- -GGUUGucGGAG----------UGAGAGCGcGAGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 115771 | 0.74 | 0.559319 |
Target: 5'- uCCAgcagcACGGCCUC-CUCgggCGCGCUCgUCg -3' miRNA: 3'- -GGU-----UGUCGGAGuGAGa--GCGCGAG-AGg -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 38089 | 0.74 | 0.53924 |
Target: 5'- -uGACGGCCgCGCUgCUCGCGCUCcgcgacgcgaUCCc -3' miRNA: 3'- ggUUGUCGGaGUGA-GAGCGCGAG----------AGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 136346 | 0.77 | 0.413031 |
Target: 5'- cCCAGCGGCCUggaccccgcggggcUGCUCUCguucgcgGCGCUCUCg -3' miRNA: 3'- -GGUUGUCGGA--------------GUGAGAG-------CGCGAGAGg -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 122690 | 0.77 | 0.390693 |
Target: 5'- gCGGCGGCCguggagCUCGCGCUCUUCg -3' miRNA: 3'- gGUUGUCGGaguga-GAGCGCGAGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 55714 | 0.77 | 0.390693 |
Target: 5'- uCCAACAGCuccauCUCGCUCauccUCGCGCcguacuucuUCUCCa -3' miRNA: 3'- -GGUUGUCG-----GAGUGAG----AGCGCG---------AGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 9275 | 1.13 | 0.002124 |
Target: 5'- gCCAACAGCCUCACUCUCGCGCUCUCCc -3' miRNA: 3'- -GGUUGUCGGAGUGAGAGCGCGAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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