Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29514 | 3' | -54.8 | NC_006151.1 | + | 122690 | 0.77 | 0.390693 |
Target: 5'- gCGGCGGCCguggagCUCGCGCUCUUCg -3' miRNA: 3'- gGUUGUCGGaguga-GAGCGCGAGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 122796 | 0.67 | 0.89372 |
Target: 5'- --cGCGGCCUCGCccgacgagcgccUCgagGCGCUCaUCCg -3' miRNA: 3'- gguUGUCGGAGUG------------AGag-CGCGAG-AGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 125473 | 0.68 | 0.879942 |
Target: 5'- gCC-ACGGCCgCGCUCggccaGCGCgUCUCg -3' miRNA: 3'- -GGuUGUCGGaGUGAGag---CGCG-AGAGg -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 131408 | 0.7 | 0.751856 |
Target: 5'- uCCAgACGGgcuCCUC-CUcCUCGCuGCUCUCCu -3' miRNA: 3'- -GGU-UGUC---GGAGuGA-GAGCG-CGAGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 132484 | 0.67 | 0.906573 |
Target: 5'- uCCAGCAGgCgcgcguagCGCUcCUCGCGCgC-CCg -3' miRNA: 3'- -GGUUGUCgGa-------GUGA-GAGCGCGaGaGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 133286 | 0.66 | 0.939401 |
Target: 5'- gCGGCGGCC-CACg-UCGagGUUCUCCc -3' miRNA: 3'- gGUUGUCGGaGUGagAGCg-CGAGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 135916 | 0.69 | 0.807617 |
Target: 5'- cCCGGCGGUCgUGCg--CGCGCUCUgCCg -3' miRNA: 3'- -GGUUGUCGGaGUGagaGCGCGAGA-GG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 136346 | 0.77 | 0.413031 |
Target: 5'- cCCAGCGGCCUggaccccgcggggcUGCUCUCguucgcgGCGCUCUCg -3' miRNA: 3'- -GGUUGUCGGA--------------GUGAGAG-------CGCGAGAGg -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 137315 | 0.66 | 0.948423 |
Target: 5'- gCCGcGCGGUgCUCgACgcgCUCGCGCUgCUCUu -3' miRNA: 3'- -GGU-UGUCG-GAG-UGa--GAGCGCGA-GAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 137761 | 0.68 | 0.857621 |
Target: 5'- uCC-GCGGCCUgGCg--CGCGUgCUCCa -3' miRNA: 3'- -GGuUGUCGGAgUGagaGCGCGaGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 139222 | 0.68 | 0.857621 |
Target: 5'- gCGACGcuGCCgCACaUCgCGCGCgUCUCCg -3' miRNA: 3'- gGUUGU--CGGaGUG-AGaGCGCG-AGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 139255 | 0.71 | 0.73232 |
Target: 5'- gCGACGGCCaCGC-C-CGCGCgCUCCg -3' miRNA: 3'- gGUUGUCGGaGUGaGaGCGCGaGAGG- -5' |
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29514 | 3' | -54.8 | NC_006151.1 | + | 141488 | 0.66 | 0.948423 |
Target: 5'- uCCGAgAGCCUcCGCggcgaCGgGCgUCUCCa -3' miRNA: 3'- -GGUUgUCGGA-GUGaga--GCgCG-AGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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