miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29514 5' -50.2 NC_006151.1 + 31583 0.66 0.99633
Target:  5'- --cGGGGGgGCGGCGcgcuCCGCgcucccccgccgccuGGGCGGGg -3'
miRNA:   3'- cuuUUUUUgUGCCGU----GGUG---------------UCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 138711 0.66 0.996085
Target:  5'- -----cGGCGCuGcGCGCCGCGcGCGGGu -3'
miRNA:   3'- cuuuuuUUGUG-C-CGUGGUGUcCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 22261 0.66 0.996085
Target:  5'- -------gUACGGguaCGCGGGCGGGg -3'
miRNA:   3'- cuuuuuuuGUGCCgugGUGUCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 41871 0.66 0.996085
Target:  5'- gGGGAGGAGCcCGGCGUCACGucCGGGg -3'
miRNA:   3'- -CUUUUUUUGuGCCGUGGUGUccGCCC- -5'
29514 5' -50.2 NC_006151.1 + 61998 0.66 0.996085
Target:  5'- --cAAGGGCACGggugacgugcGCGCCGCccuGGCGGc -3'
miRNA:   3'- cuuUUUUUGUGC----------CGUGGUGu--CCGCCc -5'
29514 5' -50.2 NC_006151.1 + 98492 0.66 0.996085
Target:  5'- gGAcGAGGGCACGGCcCCGCugcuGGagcuccuGGGg -3'
miRNA:   3'- -CUuUUUUUGUGCCGuGGUGu---CCg------CCC- -5'
29514 5' -50.2 NC_006151.1 + 100802 0.66 0.996085
Target:  5'- --cGAGGugGCgGGCgACgGCgAGGCGGGc -3'
miRNA:   3'- cuuUUUUugUG-CCG-UGgUG-UCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 121651 0.66 0.996085
Target:  5'- -------uCGCGGCGg-ACGGGCGGGc -3'
miRNA:   3'- cuuuuuuuGUGCCGUggUGUCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 141599 0.66 0.996085
Target:  5'- cGAGAGccGCcCGGCgaggcuGCCGggauCGGGCGGGu -3'
miRNA:   3'- -CUUUUuuUGuGCCG------UGGU----GUCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 4345 0.66 0.996085
Target:  5'- cGAAGGcgGCGCGGa--CGCGGGCGcagaGGg -3'
miRNA:   3'- -CUUUUuuUGUGCCgugGUGUCCGC----CC- -5'
29514 5' -50.2 NC_006151.1 + 8668 0.66 0.996085
Target:  5'- -----cGAUAcCGGUACCGacggugguggcCGGGCGGGc -3'
miRNA:   3'- cuuuuuUUGU-GCCGUGGU-----------GUCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 11061 0.66 0.996085
Target:  5'- ----uGGACGCGG-GCCACAcugugcGGCGGa -3'
miRNA:   3'- cuuuuUUUGUGCCgUGGUGU------CCGCCc -5'
29514 5' -50.2 NC_006151.1 + 46711 0.66 0.996085
Target:  5'- -----cAGCAUGGUGCCuCGGGggcCGGGg -3'
miRNA:   3'- cuuuuuUUGUGCCGUGGuGUCC---GCCC- -5'
29514 5' -50.2 NC_006151.1 + 64853 0.66 0.996085
Target:  5'- --cGAGGGCcuCGGCggaggGCCGCugcccGGCGGGa -3'
miRNA:   3'- cuuUUUUUGu-GCCG-----UGGUGu----CCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 67995 0.66 0.996085
Target:  5'- ------cGC-CGGCGCCGCGGccaCGGGc -3'
miRNA:   3'- cuuuuuuUGuGCCGUGGUGUCc--GCCC- -5'
29514 5' -50.2 NC_006151.1 + 68719 0.66 0.996085
Target:  5'- aGAGGAAAACGCcGC-CCAgCA-GCGGGc -3'
miRNA:   3'- -CUUUUUUUGUGcCGuGGU-GUcCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 131128 0.66 0.996085
Target:  5'- cGGGAGGcCGCGGCGCCGC-GGCc-- -3'
miRNA:   3'- cUUUUUUuGUGCCGUGGUGuCCGccc -5'
29514 5' -50.2 NC_006151.1 + 133406 0.66 0.996085
Target:  5'- ----cGAGCggGCGGUcuugGCCGCGGacGCGGGg -3'
miRNA:   3'- cuuuuUUUG--UGCCG----UGGUGUC--CGCCC- -5'
29514 5' -50.2 NC_006151.1 + 68043 0.66 0.995412
Target:  5'- ------cGC-CGGCGCgGCGGGCacGGGc -3'
miRNA:   3'- cuuuuuuUGuGCCGUGgUGUCCG--CCC- -5'
29514 5' -50.2 NC_006151.1 + 66783 0.66 0.995412
Target:  5'- ---cGGGACgGCGGCgGCgGC-GGCGGGg -3'
miRNA:   3'- cuuuUUUUG-UGCCG-UGgUGuCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.