miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29514 5' -50.2 NC_006151.1 + 142896 0.68 0.98217
Target:  5'- cGAAcccu-CGCgGGCGCCACcGGCGcGGg -3'
miRNA:   3'- -CUUuuuuuGUG-CCGUGGUGuCCGC-CC- -5'
29514 5' -50.2 NC_006151.1 + 141999 0.73 0.849269
Target:  5'- aAAAAGAGCGCGGCGug--GGGCGGGu -3'
miRNA:   3'- cUUUUUUUGUGCCGUggugUCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 141642 0.71 0.926069
Target:  5'- -------cCGCGGCGgCGC-GGCGGGg -3'
miRNA:   3'- cuuuuuuuGUGCCGUgGUGuCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 141599 0.66 0.996085
Target:  5'- cGAGAGccGCcCGGCgaggcuGCCGggauCGGGCGGGu -3'
miRNA:   3'- -CUUUUuuUGuGCCG------UGGU----GUCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 141295 0.68 0.98217
Target:  5'- ----cGAugACGGUggGCUcguacGCGGGCGGGu -3'
miRNA:   3'- cuuuuUUugUGCCG--UGG-----UGUCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 141142 0.75 0.74709
Target:  5'- aGAGGAAGccCACGaGCACCAuCGGGCGGu -3'
miRNA:   3'- -CUUUUUUu-GUGC-CGUGGU-GUCCGCCc -5'
29514 5' -50.2 NC_006151.1 + 140433 0.7 0.954974
Target:  5'- gGAGGAGuacguGCcCGGCGCCuGCcucGGCGGGa -3'
miRNA:   3'- -CUUUUUu----UGuGCCGUGG-UGu--CCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 140297 0.73 0.865399
Target:  5'- ------uGCGcCGGCGCCGCcuGCGGGa -3'
miRNA:   3'- cuuuuuuUGU-GCCGUGGUGucCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 139799 0.67 0.991366
Target:  5'- -cGGAGAGCGCGcGCGCCgccgucuccgcgacGCAcGcGCGGGu -3'
miRNA:   3'- cuUUUUUUGUGC-CGUGG--------------UGU-C-CGCCC- -5'
29514 5' -50.2 NC_006151.1 + 138711 0.66 0.996085
Target:  5'- -----cGGCGCuGcGCGCCGCGcGCGGGu -3'
miRNA:   3'- cuuuuuUUGUG-C-CGUGGUGUcCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 138602 0.66 0.993782
Target:  5'- ------uACGCGGCgcuGCCGCucGGCGaGGa -3'
miRNA:   3'- cuuuuuuUGUGCCG---UGGUGu-CCGC-CC- -5'
29514 5' -50.2 NC_006151.1 + 137919 0.67 0.991717
Target:  5'- --------gGCGGCuGCCACGGGCGc- -3'
miRNA:   3'- cuuuuuuugUGCCG-UGGUGUCCGCcc -5'
29514 5' -50.2 NC_006151.1 + 137598 0.67 0.985987
Target:  5'- cGggGucGGGAU-CGGgGgCGCGGGCGGGg -3'
miRNA:   3'- -CuuU--UUUUGuGCCgUgGUGUCCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 137135 0.67 0.989144
Target:  5'- -----cGGCGCGGCGCgACGcGGCGccGGa -3'
miRNA:   3'- cuuuuuUUGUGCCGUGgUGU-CCGC--CC- -5'
29514 5' -50.2 NC_006151.1 + 136973 0.66 0.995412
Target:  5'- ---uGGAGCugGcCGCCGCGccgggcGGCGGGc -3'
miRNA:   3'- cuuuUUUUGugCcGUGGUGU------CCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 136666 0.73 0.83832
Target:  5'- cGggGAGcGCGCGGCcgccgccuucuuccGCCACGuGCGGGc -3'
miRNA:   3'- -CuuUUUuUGUGCCG--------------UGGUGUcCGCCC- -5'
29514 5' -50.2 NC_006151.1 + 135562 0.68 0.984166
Target:  5'- ----uGAGCACGGCcagcgacucCCGgAGGCGGa -3'
miRNA:   3'- cuuuuUUUGUGCCGu--------GGUgUCCGCCc -5'
29514 5' -50.2 NC_006151.1 + 135089 0.67 0.989144
Target:  5'- --cGGGGGCgGCGGgGCCggGCGGGCGGcGg -3'
miRNA:   3'- cuuUUUUUG-UGCCgUGG--UGUCCGCC-C- -5'
29514 5' -50.2 NC_006151.1 + 133997 0.69 0.962596
Target:  5'- gGAAGAGAGCGCGGgggcCACCagcgcGCAGaGCGcGGc -3'
miRNA:   3'- -CUUUUUUUGUGCC----GUGG-----UGUC-CGC-CC- -5'
29514 5' -50.2 NC_006151.1 + 133907 0.66 0.994647
Target:  5'- ---cGGGACuccccUGGCGgCGCAGGCGGc -3'
miRNA:   3'- cuuuUUUUGu----GCCGUgGUGUCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.