miRNA display CGI


Results 141 - 160 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 83424 0.71 0.321048
Target:  5'- gUUGCcgccgggggGCUC-CCCgggcaGCGUGGCCGCCa -3'
miRNA:   3'- -AACGua-------CGAGcGGGg----UGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 38208 0.71 0.320331
Target:  5'- -aGCGUggacgggGCcCGCgCCCGCGaGGCCGCCu -3'
miRNA:   3'- aaCGUA-------CGaGCG-GGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 79097 0.71 0.335639
Target:  5'- -cGCGaGCgagCGCCCCuccguCGUGGCUggGCCa -3'
miRNA:   3'- aaCGUaCGa--GCGGGGu----GCACCGG--CGG- -5'
29515 3' -61.4 NC_006151.1 + 101910 0.71 0.343115
Target:  5'- -aGCAUGCcCaagcggcgccgGCCCC-CGUGGCCGgCg -3'
miRNA:   3'- aaCGUACGaG-----------CGGGGuGCACCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 61522 0.71 0.366254
Target:  5'- cUGCggGUUCGCCC----UGGCCGCCc -3'
miRNA:   3'- aACGuaCGAGCGGGgugcACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 86151 0.71 0.366254
Target:  5'- -gGCGgggaGCUCGCgCUGacgcgcgagauCGUGGCCGCCg -3'
miRNA:   3'- aaCGUa---CGAGCGgGGU-----------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64192 0.71 0.366254
Target:  5'- -cGCccGCgaUCGCCCCgggcagguccgGCGUGGgCGCCu -3'
miRNA:   3'- aaCGuaCG--AGCGGGG-----------UGCACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 75339 0.71 0.358423
Target:  5'- -gGCGUGCUCGaaggUCACGUGGCagggcaCGCCg -3'
miRNA:   3'- aaCGUACGAGCgg--GGUGCACCG------GCGG- -5'
29515 3' -61.4 NC_006151.1 + 69191 0.71 0.357646
Target:  5'- -cGCGccagggGCUCGCuccggggCCCGCGccGGCCGCCc -3'
miRNA:   3'- aaCGUa-----CGAGCG-------GGGUGCa-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 59422 0.71 0.350709
Target:  5'- -aGCAgcgGCgccaGCUCgGCGUcGGCCGCCg -3'
miRNA:   3'- aaCGUa--CGag--CGGGgUGCA-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 128194 0.71 0.344624
Target:  5'- -aGCGUGCcgcgcuccauggCGCCCCAggcgugcgacgagcuCGUGGgCGCCa -3'
miRNA:   3'- aaCGUACGa-----------GCGGGGU---------------GCACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 60662 0.72 0.280149
Target:  5'- -cGCGUcCUCGCUCC-CGUcGCCGCCg -3'
miRNA:   3'- aaCGUAcGAGCGGGGuGCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 27103 0.72 0.286667
Target:  5'- -cGCGUG-UCGCCCguCACGUcGGCgGCCg -3'
miRNA:   3'- aaCGUACgAGCGGG--GUGCA-CCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 125200 0.72 0.286667
Target:  5'- -gGCGUcGUggGCCCCGCGgcccccgcGGCCGCCc -3'
miRNA:   3'- aaCGUA-CGagCGGGGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 99116 0.72 0.289307
Target:  5'- -gGCGUGCUgGCgcugcuggaccCCggggcgcaggccgugCACGUGGCCGCCg -3'
miRNA:   3'- aaCGUACGAgCG-----------GG---------------GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 69544 0.72 0.30006
Target:  5'- cUGCAUcaGCcCGCUcgCCACGUGGCUGCg -3'
miRNA:   3'- aACGUA--CGaGCGG--GGUGCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 106208 0.72 0.30006
Target:  5'- gUGCG-GCUCGCCCUccccgaccugAUgGUGGCCGCg -3'
miRNA:   3'- aACGUaCGAGCGGGG----------UG-CACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 128617 0.72 0.30006
Target:  5'- -cGCG-GCgugCGCCCCAgGUGGCgGaCCa -3'
miRNA:   3'- aaCGUaCGa--GCGGGGUgCACCGgC-GG- -5'
29515 3' -61.4 NC_006151.1 + 56137 0.72 0.306936
Target:  5'- -cGCggGUUCGCCuUCGCGguggucacGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGG-GGUGCa-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 111130 0.72 0.280149
Target:  5'- -cGCgucuGUGCgCGCCCCcgcgcGCGcGGCCGCCu -3'
miRNA:   3'- aaCG----UACGaGCGGGG-----UGCaCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.