miRNA display CGI


Results 121 - 140 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 57502 0.67 0.57451
Target:  5'- -cGCAcgcGCUCgGCCgCgGCGgcggcGGCCGCCu -3'
miRNA:   3'- aaCGUa--CGAG-CGG-GgUGCa----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 18837 0.67 0.584453
Target:  5'- -aGCGUGUa-GUCCCagguggcgACGUGGCCGUUg -3'
miRNA:   3'- aaCGUACGagCGGGG--------UGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 99964 0.67 0.564606
Target:  5'- -cGCAccaaGCUCGCCgCGCucGUGGCgGCg -3'
miRNA:   3'- aaCGUa---CGAGCGGgGUG--CACCGgCGg -5'
29515 3' -61.4 NC_006151.1 + 25111 0.67 0.584453
Target:  5'- cUGCGUGCgagCGCUggGCGUGGaCGCg -3'
miRNA:   3'- aACGUACGa--GCGGggUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 103472 0.67 0.584453
Target:  5'- -gGCAcggUGCUCGCggcgcuguggCgCCugGUGGCgCGCUa -3'
miRNA:   3'- aaCGU---ACGAGCG----------G-GGugCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 60414 0.67 0.564606
Target:  5'- -cGCAcgGCccagCGgCCCACGUccucggggGGCCGCUg -3'
miRNA:   3'- aaCGUa-CGa---GCgGGGUGCA--------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 97846 0.67 0.563618
Target:  5'- gUGCGcGCgcagCGCgucgUCCGCGUucucggcGGCCGCCa -3'
miRNA:   3'- aACGUaCGa---GCG----GGGUGCA-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 70782 0.67 0.554748
Target:  5'- -cGCGcGcCUCcgGCaCCgGCGUGGCCGUCg -3'
miRNA:   3'- aaCGUaC-GAG--CG-GGgUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 115207 0.67 0.554748
Target:  5'- -cGCggGCgcgCGCgCgAuCGUGGCCGCUg -3'
miRNA:   3'- aaCGuaCGa--GCGgGgU-GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58130 0.67 0.554748
Target:  5'- -cGCGUcGCccgCGCCgUACGcGGCCGCg -3'
miRNA:   3'- aaCGUA-CGa--GCGGgGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 61817 0.67 0.544941
Target:  5'- -aGCGUGg-UGCUCUACGcggcgucgacggUGGCCGCCc -3'
miRNA:   3'- aaCGUACgaGCGGGGUGC------------ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 66054 0.67 0.544941
Target:  5'- gUGCcUGUccagGaCCCCGCGgacGGCCGCCu -3'
miRNA:   3'- aACGuACGag--C-GGGGUGCa--CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 84475 0.67 0.544941
Target:  5'- -cGCGUgGUUCGCCUU-CGaGGCCGCUg -3'
miRNA:   3'- aaCGUA-CGAGCGGGGuGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 117163 0.67 0.544941
Target:  5'- -cGCuguUGCUCGagaCGCGguagaagGGCCGCCg -3'
miRNA:   3'- aaCGu--ACGAGCgggGUGCa------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 54129 0.67 0.544941
Target:  5'- cUGCGgacggGCUCuGCCCCGgCG-GcGCCGCg -3'
miRNA:   3'- aACGUa----CGAG-CGGGGU-GCaC-CGGCGg -5'
29515 3' -61.4 NC_006151.1 + 133020 0.67 0.554748
Target:  5'- gUGCu--CUCGUCCaggacgGCGuUGGCCGCCu -3'
miRNA:   3'- aACGuacGAGCGGGg-----UGC-ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 102279 0.67 0.554748
Target:  5'- cUGCcgGagcgCGgCCCGgccggggacuuUGUGGCCGCCa -3'
miRNA:   3'- aACGuaCga--GCgGGGU-----------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 97470 0.67 0.554748
Target:  5'- -gGCAggcgGCUCaCCgCCACGUGGaCGCg -3'
miRNA:   3'- aaCGUa---CGAGcGG-GGUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 72005 0.67 0.54201
Target:  5'- -gGCcguUGCUgaagaccacgucggCGCCCCGCGcGGgCGCCc -3'
miRNA:   3'- aaCGu--ACGA--------------GCGGGGUGCaCCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 135884 0.67 0.554748
Target:  5'- -cGCGUGCg-GCCCguguuCGUcGCCGCCg -3'
miRNA:   3'- aaCGUACGagCGGGgu---GCAcCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.