miRNA display CGI


Results 141 - 160 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 105552 0.67 0.57451
Target:  5'- cUGCG-GCacgaCGCCCUGCGcgcgcuggcGGCCGCCu -3'
miRNA:   3'- aACGUaCGa---GCGGGGUGCa--------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 54129 0.67 0.544941
Target:  5'- cUGCGgacggGCUCuGCCCCGgCG-GcGCCGCg -3'
miRNA:   3'- aACGUa----CGAG-CGGGGU-GCaC-CGGCGg -5'
29515 3' -61.4 NC_006151.1 + 133020 0.67 0.554748
Target:  5'- gUGCu--CUCGUCCaggacgGCGuUGGCCGCCu -3'
miRNA:   3'- aACGuacGAGCGGGg-----UGC-ACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 106803 0.66 0.634531
Target:  5'- -gGCgGUGCUCgucgggGCCCCGC-UGGUgauCGCCa -3'
miRNA:   3'- aaCG-UACGAG------CGGGGUGcACCG---GCGG- -5'
29515 3' -61.4 NC_006151.1 + 122730 0.66 0.634531
Target:  5'- -aGCAcuuUGaC-CGCgCCCGCGcGGCCGCg -3'
miRNA:   3'- aaCGU---AC-GaGCG-GGGUGCaCCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 129519 0.66 0.634531
Target:  5'- -aGCc-GCUUGCCgCCgACGggggggcccggGGCCGCCg -3'
miRNA:   3'- aaCGuaCGAGCGG-GG-UGCa----------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 58300 0.66 0.634531
Target:  5'- -cGCucauCUCGCCCCgGCGUuucagcggcGGCgCGCCg -3'
miRNA:   3'- aaCGuac-GAGCGGGG-UGCA---------CCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 19367 0.66 0.64457
Target:  5'- -aGCGUGUagaGgCCCgugucguuggGCGUGGCcCGCCg -3'
miRNA:   3'- aaCGUACGag-CgGGG----------UGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 37942 0.66 0.64457
Target:  5'- -cGCAgcccgGCcgcgUGCCCCGCGagcUGGCggaCGCCu -3'
miRNA:   3'- aaCGUa----CGa---GCGGGGUGC---ACCG---GCGG- -5'
29515 3' -61.4 NC_006151.1 + 11020 0.66 0.64457
Target:  5'- -cGCccGCUCGCUCgC-CG-GGCCgGCCg -3'
miRNA:   3'- aaCGuaCGAGCGGG-GuGCaCCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 78735 0.66 0.634531
Target:  5'- -cGCGcGCUgCGgCCCACGU--CCGCCg -3'
miRNA:   3'- aaCGUaCGA-GCgGGGUGCAccGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 96392 0.66 0.62449
Target:  5'- -cGCgGUGC-CGgCgCACGgcGGCCGCCa -3'
miRNA:   3'- aaCG-UACGaGCgGgGUGCa-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 85606 0.66 0.62449
Target:  5'- -gGCGcGCUCGUgCCCaacGCGccGCCGCCg -3'
miRNA:   3'- aaCGUaCGAGCG-GGG---UGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 77283 0.66 0.62449
Target:  5'- -cGCucacccauuUGC-CGCgCCGCGUGugcccGCCGCCa -3'
miRNA:   3'- aaCGu--------ACGaGCGgGGUGCAC-----CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 73114 0.66 0.62449
Target:  5'- -cGCcgGCggcgCGCCCgCGCG-GGuuGCa -3'
miRNA:   3'- aaCGuaCGa---GCGGG-GUGCaCCggCGg -5'
29515 3' -61.4 NC_006151.1 + 134268 0.66 0.62449
Target:  5'- gUGCAgGCgauuguaGCCCCg---GGCCGCCc -3'
miRNA:   3'- aACGUaCGag-----CGGGGugcaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 39689 0.66 0.614454
Target:  5'- -cGCGUGCU--CCCCAcCGUGGaCgGCUg -3'
miRNA:   3'- aaCGUACGAgcGGGGU-GCACC-GgCGG- -5'
29515 3' -61.4 NC_006151.1 + 136755 0.66 0.614454
Target:  5'- -cGCGcGcCUCGCCCCGgcCaUGGgCGCCg -3'
miRNA:   3'- aaCGUaC-GAGCGGGGU--GcACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 95377 0.66 0.614454
Target:  5'- gUUGCAgacgccguuCUCGCCggGCGUGGcCCGCUg -3'
miRNA:   3'- -AACGUac-------GAGCGGggUGCACC-GGCGG- -5'
29515 3' -61.4 NC_006151.1 + 6927 0.66 0.614454
Target:  5'- uUUGCAUGUcCGgCCC-CGaGGgCGCCa -3'
miRNA:   3'- -AACGUACGaGCgGGGuGCaCCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.