miRNA display CGI


Results 121 - 140 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 769 0.69 0.441845
Target:  5'- -gGCucccCUCGCgCCACGcGGUCGCCg -3'
miRNA:   3'- aaCGuac-GAGCGgGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 7090 0.69 0.440957
Target:  5'- uUUGCAUGCccggccCGCUCUGCGgccaucuUGGCCGCg -3'
miRNA:   3'- -AACGUACGa-----GCGGGGUGC-------ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 51180 0.69 0.424282
Target:  5'- gUGCAggGCcCGCUCCACGacgagGGUgGCCa -3'
miRNA:   3'- aACGUa-CGaGCGGGGUGCa----CCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 122407 0.7 0.415659
Target:  5'- -gGCGgcGCUCGCCgC-CGUGgacGCCGCCg -3'
miRNA:   3'- aaCGUa-CGAGCGGgGuGCAC---CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 123240 0.7 0.415659
Target:  5'- -cGCAcgGCgcgCGUUCUGCGaGGCCGCCg -3'
miRNA:   3'- aaCGUa-CGa--GCGGGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 107101 0.7 0.415659
Target:  5'- -cGCGUGCUCuggGCgCCGCccGaGCCGCCg -3'
miRNA:   3'- aaCGUACGAG---CGgGGUGcaC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 77523 0.7 0.407144
Target:  5'- -gGCGcGcCUCGgCCgCGCGUgGGCCGCCc -3'
miRNA:   3'- aaCGUaC-GAGCgGG-GUGCA-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 87436 0.7 0.407144
Target:  5'- -gGcCGUGCcCGCCgCCGcCGcGGCCGCCc -3'
miRNA:   3'- aaC-GUACGaGCGG-GGU-GCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 50628 0.7 0.407144
Target:  5'- -aGCGUGCaCGCCUCgGCGacGGCCGCg -3'
miRNA:   3'- aaCGUACGaGCGGGG-UGCa-CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 45183 0.7 0.407144
Target:  5'- -gGCGUGCcCGCCaCCACGgacGGCgacggggugCGCCg -3'
miRNA:   3'- aaCGUACGaGCGG-GGUGCa--CCG---------GCGG- -5'
29515 3' -61.4 NC_006151.1 + 62286 0.7 0.39624
Target:  5'- cUGCGUGCUCGUggccagcgcggccuUCgGCGUGuCCGCCc -3'
miRNA:   3'- aACGUACGAGCG--------------GGgUGCACcGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 141752 0.7 0.390446
Target:  5'- -cGCGggGCgcgCGCCCCG-GUGGCguCGCCg -3'
miRNA:   3'- aaCGUa-CGa--GCGGGGUgCACCG--GCGG- -5'
29515 3' -61.4 NC_006151.1 + 23906 0.7 0.382267
Target:  5'- -gGCGUcggucGCggGCCCgACG-GGCCGCCg -3'
miRNA:   3'- aaCGUA-----CGagCGGGgUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 135356 0.7 0.382267
Target:  5'- -cGCGaGC-CGCCgCGCGuUGGCCGCg -3'
miRNA:   3'- aaCGUaCGaGCGGgGUGC-ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 7008 0.7 0.374202
Target:  5'- uUUGCAUGUcCgGCCCC-CGcGGCgGCCa -3'
miRNA:   3'- -AACGUACGaG-CGGGGuGCaCCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 61522 0.71 0.366254
Target:  5'- cUGCggGUUCGCCC----UGGCCGCCc -3'
miRNA:   3'- aACGuaCGAGCGGGgugcACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 86151 0.71 0.366254
Target:  5'- -gGCGgggaGCUCGCgCUGacgcgcgagauCGUGGCCGCCg -3'
miRNA:   3'- aaCGUa---CGAGCGgGGU-----------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 64192 0.71 0.366254
Target:  5'- -cGCccGCgaUCGCCCCgggcagguccgGCGUGGgCGCCu -3'
miRNA:   3'- aaCGuaCG--AGCGGGG-----------UGCACCgGCGG- -5'
29515 3' -61.4 NC_006151.1 + 75339 0.71 0.358423
Target:  5'- -gGCGUGCUCGaaggUCACGUGGCagggcaCGCCg -3'
miRNA:   3'- aaCGUACGAGCgg--GGUGCACCG------GCGG- -5'
29515 3' -61.4 NC_006151.1 + 69191 0.71 0.357646
Target:  5'- -cGCGccagggGCUCGCuccggggCCCGCGccGGCCGCCc -3'
miRNA:   3'- aaCGUa-----CGAGCG-------GGGUGCa-CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.