miRNA display CGI


Results 121 - 140 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 84475 0.67 0.544941
Target:  5'- -cGCGUgGUUCGCCUU-CGaGGCCGCUg -3'
miRNA:   3'- aaCGUA-CGAGCGGGGuGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 66054 0.67 0.544941
Target:  5'- gUGCcUGUccagGaCCCCGCGgacGGCCGCCu -3'
miRNA:   3'- aACGuACGag--C-GGGGUGCa--CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 120101 0.67 0.564606
Target:  5'- -aGCcgGUGCUgCGCCgCCGCGUGGUggacaUGCUc -3'
miRNA:   3'- aaCG--UACGA-GCGG-GGUGCACCG-----GCGG- -5'
29515 3' -61.4 NC_006151.1 + 84937 0.67 0.564606
Target:  5'- -gGCGUGCUCuUCggCACGUGGUaCGCCa -3'
miRNA:   3'- aaCGUACGAGcGGg-GUGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 87604 0.67 0.564606
Target:  5'- -cGCcaGCUCGgCCgC-CGUGGCCuGCCa -3'
miRNA:   3'- aaCGuaCGAGCgGG-GuGCACCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 110184 0.66 0.594429
Target:  5'- -cGCGUGC-CGCCUgauaGCGc-GCCGCCu -3'
miRNA:   3'- aaCGUACGaGCGGGg---UGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 119461 0.66 0.594429
Target:  5'- -cGaCGUGgaCGCCgugcgCUACGUGGCCGgCa -3'
miRNA:   3'- aaC-GUACgaGCGG-----GGUGCACCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 26334 0.66 0.594429
Target:  5'- -gGCGagGCcCGCCUCACGgggcggcggcgGGCCGCg -3'
miRNA:   3'- aaCGUa-CGaGCGGGGUGCa----------CCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 117247 0.66 0.59343
Target:  5'- -cGUcgGCggGCCCgaggcgcgggccgCGCGcGGCCGCCg -3'
miRNA:   3'- aaCGuaCGagCGGG-------------GUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 39535 0.66 0.59343
Target:  5'- -gGCcUGCuUCG-CCCGCGUGGaggccuccuucgcCCGCCu -3'
miRNA:   3'- aaCGuACG-AGCgGGGUGCACC-------------GGCGG- -5'
29515 3' -61.4 NC_006151.1 + 103472 0.67 0.584453
Target:  5'- -gGCAcggUGCUCGCggcgcuguggCgCCugGUGGCgCGCUa -3'
miRNA:   3'- aaCGU---ACGAGCG----------G-GGugCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 25111 0.67 0.584453
Target:  5'- cUGCGUGCgagCGCUggGCGUGGaCGCg -3'
miRNA:   3'- aACGUACGa--GCGGggUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 18837 0.67 0.584453
Target:  5'- -aGCGUGUa-GUCCCagguggcgACGUGGCCGUUg -3'
miRNA:   3'- aaCGUACGagCGGGG--------UGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 57502 0.67 0.57451
Target:  5'- -cGCAcgcGCUCgGCCgCgGCGgcggcGGCCGCCu -3'
miRNA:   3'- aaCGUa--CGAG-CGG-GgUGCa----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 97650 0.67 0.57451
Target:  5'- gUGCGcGC-CGCCuCCugGUcGCCGCg -3'
miRNA:   3'- aACGUaCGaGCGG-GGugCAcCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 86726 0.67 0.57451
Target:  5'- -cGCG-GCgCGCCgCCGCGaGGCCGgCg -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUGCaCCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 105552 0.67 0.57451
Target:  5'- cUGCG-GCacgaCGCCCUGCGcgcgcuggcGGCCGCCu -3'
miRNA:   3'- aACGUaCGa---GCGGGGUGCa--------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 81991 0.67 0.573518
Target:  5'- cUGCAccacgGCg-GCCagggcggCCGCGUGcGCCGCCg -3'
miRNA:   3'- aACGUa----CGagCGG-------GGUGCAC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 63762 0.67 0.571534
Target:  5'- -gGCGUcCUCGgcgcCCCCGCGUcgccaggcggggucGGCCGUCg -3'
miRNA:   3'- aaCGUAcGAGC----GGGGUGCA--------------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 99964 0.67 0.564606
Target:  5'- -cGCAccaaGCUCGCCgCGCucGUGGCgGCg -3'
miRNA:   3'- aaCGUa---CGAGCGGgGUG--CACCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.