miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 87493 0.73 0.2435
Target:  5'- -cGCG-GC-CGCCCC-CGUucaGGCCGCCg -3'
miRNA:   3'- aaCGUaCGaGCGGGGuGCA---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 87604 0.67 0.564606
Target:  5'- -cGCcaGCUCGgCCgC-CGUGGCCuGCCa -3'
miRNA:   3'- aaCGuaCGAGCgGG-GuGCACCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 89669 0.66 0.64457
Target:  5'- -cGCGUGCUCggGCgCacaaagaGCGagacGGCCGCCg -3'
miRNA:   3'- aaCGUACGAG--CGgGg------UGCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 92171 0.66 0.64457
Target:  5'- -gGcCGUGCgCGCCgaCgGCGacggGGCCGCCg -3'
miRNA:   3'- aaC-GUACGaGCGG--GgUGCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 92655 0.69 0.450779
Target:  5'- -gGCAaggcGCUCGCCCUGCugccGGCgGCCg -3'
miRNA:   3'- aaCGUa---CGAGCGGGGUGca--CCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 95377 0.66 0.614454
Target:  5'- gUUGCAgacgccguuCUCGCCggGCGUGGcCCGCUg -3'
miRNA:   3'- -AACGUac-------GAGCGGggUGCACC-GGCGG- -5'
29515 3' -61.4 NC_006151.1 + 95677 0.68 0.525502
Target:  5'- -gGCGcGCUCGCCguCCAgGUG-CCGCUg -3'
miRNA:   3'- aaCGUaCGAGCGG--GGUgCACcGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 96392 0.66 0.62449
Target:  5'- -cGCgGUGC-CGgCgCACGgcGGCCGCCa -3'
miRNA:   3'- aaCG-UACGaGCgGgGUGCa-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 97470 0.67 0.554748
Target:  5'- -gGCAggcgGCUCaCCgCCACGUGGaCGCg -3'
miRNA:   3'- aaCGUa---CGAGcGG-GGUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 97650 0.67 0.57451
Target:  5'- gUGCGcGC-CGCCuCCugGUcGCCGCg -3'
miRNA:   3'- aACGUaCGaGCGG-GGugCAcCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 97698 0.68 0.506331
Target:  5'- -aGCcgGuCUUGCgUCACGUGGCCcaggaGCCc -3'
miRNA:   3'- aaCGuaC-GAGCGgGGUGCACCGG-----CGG- -5'
29515 3' -61.4 NC_006151.1 + 97846 0.67 0.563618
Target:  5'- gUGCGcGCgcagCGCgucgUCCGCGUucucggcGGCCGCCa -3'
miRNA:   3'- aACGUaCGa---GCG----GGGUGCA-------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 98435 0.66 0.634531
Target:  5'- -gGcCGUGCUCGCCgagaACcUGGCCgGCCu -3'
miRNA:   3'- aaC-GUACGAGCGGgg--UGcACCGG-CGG- -5'
29515 3' -61.4 NC_006151.1 + 99116 0.72 0.289307
Target:  5'- -gGCGUGCUgGCgcugcuggaccCCggggcgcaggccgugCACGUGGCCGCCg -3'
miRNA:   3'- aaCGUACGAgCG-----------GG---------------GUGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 99526 0.68 0.525502
Target:  5'- cUGCAUgGCgccgCGCCCgcccacggagCACGUGGgCGCg -3'
miRNA:   3'- aACGUA-CGa---GCGGG----------GUGCACCgGCGg -5'
29515 3' -61.4 NC_006151.1 + 99631 0.68 0.506331
Target:  5'- -cGCGcGCgagGCCCucaaCACGUGGCuCGCCu -3'
miRNA:   3'- aaCGUaCGag-CGGG----GUGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 99964 0.67 0.564606
Target:  5'- -cGCAccaaGCUCGCCgCGCucGUGGCgGCg -3'
miRNA:   3'- aaCGUa---CGAGCGGgGUG--CACCGgCGg -5'
29515 3' -61.4 NC_006151.1 + 100100 0.68 0.496858
Target:  5'- -cGCcgGCgcCGCCCuCGC-UGGCgGCCa -3'
miRNA:   3'- aaCGuaCGa-GCGGG-GUGcACCGgCGG- -5'
29515 3' -61.4 NC_006151.1 + 100546 0.73 0.2435
Target:  5'- cUGCAgacgagcGC-CGCCCuCACGgccGGCCGCCu -3'
miRNA:   3'- aACGUa------CGaGCGGG-GUGCa--CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 100938 0.66 0.594429
Target:  5'- gUGCcccUGCUCGCgCaaACGUGGgUGCCc -3'
miRNA:   3'- aACGu--ACGAGCG-GggUGCACCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.