Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29515 | 5' | -58.7 | NC_006151.1 | + | 8610 | 0.66 | 0.774884 |
Target: 5'- -gGGGGCCggUGCgGGUGUGAGggUCCu -3' miRNA: 3'- uaCCCCGGa-GUG-CCACGUUCgaAGGc -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 135943 | 0.66 | 0.726827 |
Target: 5'- -cGGGGagccCCUCGCGGcGCGGGacgUCCu -3' miRNA: 3'- uaCCCC----GGAGUGCCaCGUUCga-AGGc -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 53977 | 0.66 | 0.736639 |
Target: 5'- -cGGcGCCUcCGCGGgcgucgcgGCGAGCUcCCGg -3' miRNA: 3'- uaCCcCGGA-GUGCCa-------CGUUCGAaGGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 93744 | 0.66 | 0.746359 |
Target: 5'- gAUGcGGGCCUCGuCGGgGCGcggGGCgUCCc -3' miRNA: 3'- -UAC-CCCGGAGU-GCCaCGU---UCGaAGGc -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 112041 | 0.66 | 0.746359 |
Target: 5'- cUGGGGCCg-GCGG-GCGGGCggCgGc -3' miRNA: 3'- uACCCCGGagUGCCaCGUUCGaaGgC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 10978 | 0.66 | 0.755979 |
Target: 5'- -gGuGGGUgUCACGGUG-GAGCgggCCGg -3' miRNA: 3'- uaC-CCCGgAGUGCCACgUUCGaa-GGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 4369 | 0.66 | 0.765491 |
Target: 5'- -aGaGGGCCUCgACGGUcgccuccccggcGCGGGggUCCGc -3' miRNA: 3'- uaC-CCCGGAG-UGCCA------------CGUUCgaAGGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 133615 | 0.66 | 0.765491 |
Target: 5'- -aGGGGCgUCugGGggucGC-GGCggCCGg -3' miRNA: 3'- uaCCCCGgAGugCCa---CGuUCGaaGGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 38683 | 0.66 | 0.765491 |
Target: 5'- -gGGGGCC-C-CGGcGCAAGCg-CCGc -3' miRNA: 3'- uaCCCCGGaGuGCCaCGUUCGaaGGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 4216 | 0.66 | 0.774884 |
Target: 5'- -gGGcGGCCggggCGCGG-GCGGGCgcgggcagCCGg -3' miRNA: 3'- uaCC-CCGGa---GUGCCaCGUUCGaa------GGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 5257 | 0.67 | 0.666567 |
Target: 5'- -gGGGGCC-CGgGGggcggaggGCGAGCgggCCGg -3' miRNA: 3'- uaCCCCGGaGUgCCa-------CGUUCGaa-GGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 68900 | 0.67 | 0.676731 |
Target: 5'- -aGGacGGCCUCGCGGUcgcGCGGGCggaUCgCGa -3' miRNA: 3'- uaCC--CCGGAGUGCCA---CGUUCGa--AG-GC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 23971 | 0.67 | 0.686859 |
Target: 5'- -aGGGGCCUCucuggccacgACGGUGCGgaccacgaggAGC--CCGa -3' miRNA: 3'- uaCCCCGGAG----------UGCCACGU----------UCGaaGGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 21546 | 0.67 | 0.70697 |
Target: 5'- -cGGGGCCggggcCugGGccucgGCGAGCccgCCGa -3' miRNA: 3'- uaCCCCGGa----GugCCa----CGUUCGaa-GGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 28261 | 0.67 | 0.716935 |
Target: 5'- -cGGGGCCUCACacgugggccccgGGgacGCGGGC--CCGg -3' miRNA: 3'- uaCCCCGGAGUG------------CCa--CGUUCGaaGGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 63172 | 0.68 | 0.634919 |
Target: 5'- -cGGGGCCUuggggcgCACGGgGCcGGGCUcgCCGa -3' miRNA: 3'- uaCCCCGGA-------GUGCCaCG-UUCGAa-GGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 5114 | 0.68 | 0.625716 |
Target: 5'- gGUGGcGGCCcggCGCGG-GCGAGUggggcgCCGg -3' miRNA: 3'- -UACC-CCGGa--GUGCCaCGUUCGaa----GGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 111856 | 0.68 | 0.625716 |
Target: 5'- -gGGGGCgCUCGgGGUcGCAGGCcgUCUc -3' miRNA: 3'- uaCCCCG-GAGUgCCA-CGUUCGa-AGGc -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 65044 | 0.68 | 0.615495 |
Target: 5'- -gGGGGCCcgGCGGcgGCGGGCgcCCGu -3' miRNA: 3'- uaCCCCGGagUGCCa-CGUUCGaaGGC- -5' |
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29515 | 5' | -58.7 | NC_006151.1 | + | 121402 | 0.68 | 0.615495 |
Target: 5'- uUGGGGCCU-GCGGcGCGGGCggggacgUCgCGg -3' miRNA: 3'- uACCCCGGAgUGCCaCGUUCGa------AG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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