miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 30166 0.7 0.584453
Target:  5'- aGCGcGGGAGGGCgggugagaGAGGuCGGGGAGGc -3'
miRNA:   3'- cUGC-UCCUCCUG--------CUCCuGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 27306 0.7 0.584453
Target:  5'- gGGCGuGGGGGuCGAGG-CGGGGgacGGGGg -3'
miRNA:   3'- -CUGCuCCUCCuGCUCCuGCUCC---UCCU- -5'
29516 5' -58.1 NC_006151.1 + 8213 0.7 0.584453
Target:  5'- aGACGAaGAGGGCcGGGuccccuucccgGCGGGGAGGGc -3'
miRNA:   3'- -CUGCUcCUCCUGcUCC-----------UGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110365 0.7 0.584453
Target:  5'- aGACuuGGAGGugGGGaGAUcGGGGGGAa -3'
miRNA:   3'- -CUGcuCCUCCugCUC-CUGcUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 23007 0.7 0.594429
Target:  5'- cGCGGGuGGGGGCGcggGGGugGuGGAGGc -3'
miRNA:   3'- cUGCUC-CUCCUGC---UCCugCuCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 139535 0.7 0.594429
Target:  5'- aGCGAGGcguccAGGuCGGGGAgCGAGGAGcGGc -3'
miRNA:   3'- cUGCUCC-----UCCuGCUCCU-GCUCCUC-CU- -5'
29516 5' -58.1 NC_006151.1 + 44294 0.7 0.634531
Target:  5'- aACaGGGGGGaACGGGGAUgcgaaGGGGAGGGg -3'
miRNA:   3'- cUGcUCCUCC-UGCUCCUG-----CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 121363 0.7 0.634531
Target:  5'- aGACGGGcGcGGACGGcGGCGAGGAGa- -3'
miRNA:   3'- -CUGCUC-CuCCUGCUcCUGCUCCUCcu -5'
29516 5' -58.1 NC_006151.1 + 119175 0.7 0.628506
Target:  5'- uGACgGAGGuGGACGAcgcGGGCGccgccgacgcgcgcaAGGAGGGc -3'
miRNA:   3'- -CUG-CUCCuCCUGCU---CCUGC---------------UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110480 0.7 0.62449
Target:  5'- -uUGGGGGGGAUugGGGGACuuGGGGGGAu -3'
miRNA:   3'- cuGCUCCUCCUG--CUCCUGc-UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 137589 0.7 0.614454
Target:  5'- cGACGAGGucggggucGGGAuCGGGGGCGcGGGcgGGGAc -3'
miRNA:   3'- -CUGCUCC--------UCCU-GCUCCUGC-UCC--UCCU- -5'
29516 5' -58.1 NC_006151.1 + 100800 0.7 0.614454
Target:  5'- cACGAGGuggcGGGCGAcGGCGAGGcGGGc -3'
miRNA:   3'- cUGCUCCu---CCUGCUcCUGCUCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 16134 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16204 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16274 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16344 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16414 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16484 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 32843 0.71 0.564606
Target:  5'- --aGAGGGGGgccgGCGGGGAUGGGGAaGAa -3'
miRNA:   3'- cugCUCCUCC----UGCUCCUGCUCCUcCU- -5'
29516 5' -58.1 NC_006151.1 + 84389 0.71 0.554748
Target:  5'- cGCGGGGAcGGGCGGGGAgCG-GGuGGGc -3'
miRNA:   3'- cUGCUCCU-CCUGCUCCU-GCuCCuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.